Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 OR5D17P-201ENST00000531492 978 ntBASIC3.62□□□□□ -1.83
COL28A1Q2UY09 YPEL5P3-201ENST00000547227 352 ntBASIC3.62□□□□□ -1.83
COL28A1Q2UY09 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC3.62□□□□□ -1.83
COL28A1Q2UY09 MIR5187-201ENST00000583479 76 ntBASIC3.62□□□□□ -1.83
COL28A1Q2UY09 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC3.62□□□□□ -1.83
COL28A1Q2UY09 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.62□□□□□ -1.83
COL28A1Q2UY09 BNIP3P8-201ENST00000597863 560 ntBASIC3.62□□□□□ -1.83
COL28A1Q2UY09 AC068790.3-201ENST00000602988 553 ntBASIC3.62□□□□□ -1.83
COL28A1Q2UY09 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC3.62□□□□□ -1.83
COL28A1Q2UY09 AL139089.1-201ENST00000620372 975 ntBASIC3.62□□□□□ -1.83
COL28A1Q2UY09 AL590240.3-201ENST00000621416 943 ntBASIC3.62□□□□□ -1.83
COL28A1Q2UY09 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC3.62□□□□□ -1.83
COL28A1Q2UY09 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC3.62□□□□□ -1.83
COL28A1Q2UY09 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
COL28A1Q2UY09 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.62□□□□□ -1.83
COL28A1Q2UY09 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL28A1Q2UY09 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.62□□□□□ -1.83
COL28A1Q2UY09 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
COL28A1Q2UY09 SRP72P2-201ENST00000344851 1979 ntBASIC3.62□□□□□ -1.83
COL28A1Q2UY09 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.61□□□□□ -1.83
COL28A1Q2UY09 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
COL28A1Q2UY09 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
COL28A1Q2UY09 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
COL28A1Q2UY09 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.61□□□□□ -1.83
COL28A1Q2UY09 RNU6-623P-201ENST00000363143 105 ntBASIC3.61□□□□□ -1.83
COL28A1Q2UY09 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC3.61□□□□□ -1.83
COL28A1Q2UY09 HMGN1P24-201ENST00000412282 298 ntBASIC3.61□□□□□ -1.83
COL28A1Q2UY09 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.61□□□□□ -1.83
COL28A1Q2UY09 MTCO2P34-201ENST00000421994 607 ntBASIC3.61□□□□□ -1.83
COL28A1Q2UY09 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC3.61□□□□□ -1.83
COL28A1Q2UY09 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC3.61□□□□□ -1.83
COL28A1Q2UY09 AC005326.1-201ENST00000429197 123 ntBASIC3.61□□□□□ -1.83
COL28A1Q2UY09 OR4K11P-201ENST00000431829 904 ntBASIC3.61□□□□□ -1.83
COL28A1Q2UY09 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
COL28A1Q2UY09 AC004866.2-201ENST00000438285 481 ntBASIC3.61□□□□□ -1.83
COL28A1Q2UY09 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC3.61□□□□□ -1.83
COL28A1Q2UY09 TPT1P14-201ENST00000448018 505 ntBASIC3.61□□□□□ -1.83
COL28A1Q2UY09 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC3.61□□□□□ -1.83
COL28A1Q2UY09 AL033528.1-201ENST00000453780 140 ntBASIC3.61□□□□□ -1.83
COL28A1Q2UY09 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC3.61□□□□□ -1.83
COL28A1Q2UY09 snoU109.1-201ENST00000459339 135 ntBASIC3.61□□□□□ -1.83
COL28A1Q2UY09 AC008155.2-201ENST00000464337 397 ntBASIC3.61□□□□□ -1.83
COL28A1Q2UY09 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC3.61□□□□□ -1.83
COL28A1Q2UY09 LARP1BP2-201ENST00000486594 519 ntBASIC3.61□□□□□ -1.83
COL28A1Q2UY09 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC3.61□□□□□ -1.83
COL28A1Q2UY09 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.61□□□□□ -1.83
COL28A1Q2UY09 AC026801.2-201ENST00000515352 425 ntBASIC3.61□□□□□ -1.83
COL28A1Q2UY09 AC022447.1-201ENST00000515358 464 ntBASIC3.61□□□□□ -1.83
COL28A1Q2UY09 RNU6-1073P-201ENST00000517182 106 ntBASIC3.61□□□□□ -1.83
COL28A1Q2UY09 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC3.61□□□□□ -1.83
COL28A1Q2UY09 AC022616.6-201ENST00000520479 119 ntBASIC3.61□□□□□ -1.83
COL28A1Q2UY09 AP000907.2-201ENST00000530827 353 ntBASIC3.61□□□□□ -1.83
COL28A1Q2UY09 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC3.61□□□□□ -1.83
COL28A1Q2UY09 AC011611.1-201ENST00000552179 197 ntBASIC3.61□□□□□ -1.83
COL28A1Q2UY09 OR4T1P-201ENST00000554933 911 ntBASIC3.61□□□□□ -1.83
COL28A1Q2UY09 AC006362.1-201ENST00000567392 174 ntBASIC3.61□□□□□ -1.83
COL28A1Q2UY09 AL356432.3-201ENST00000568952 465 ntBASIC3.61□□□□□ -1.83
COL28A1Q2UY09 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.61□□□□□ -1.83
COL28A1Q2UY09 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.61□□□□□ -1.83
COL28A1Q2UY09 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.61□□□□□ -1.83
COL28A1Q2UY09 AC006504.3-201ENST00000586818 523 ntBASIC3.61□□□□□ -1.83
COL28A1Q2UY09 VN1R79P-201ENST00000593540 513 ntBASIC3.61□□□□□ -1.83
COL28A1Q2UY09 AL022099.1-201ENST00000604551 712 ntBASIC3.61□□□□□ -1.83
COL28A1Q2UY09 AC004908.2-201ENST00000609090 574 ntBASIC3.61□□□□□ -1.83
COL28A1Q2UY09 AL355365.1-201ENST00000616480 294 ntBASIC3.61□□□□□ -1.83
COL28A1Q2UY09 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
COL28A1Q2UY09 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
COL28A1Q2UY09 TEX21P-201ENST00000447107 1476 ntBASIC3.6□□□□□ -1.83
COL28A1Q2UY09 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
COL28A1Q2UY09 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
COL28A1Q2UY09 RNU6-223P-201ENST00000362830 107 ntBASIC3.6□□□□□ -1.83
COL28A1Q2UY09 RNU6-173P-201ENST00000364215 104 ntBASIC3.6□□□□□ -1.83
COL28A1Q2UY09 RNA5SP126-201ENST00000365092 109 ntBASIC3.6□□□□□ -1.83
COL28A1Q2UY09 Y_RNA.318-201ENST00000365131 97 ntBASIC3.6□□□□□ -1.83
COL28A1Q2UY09 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.6□□□□□ -1.83
COL28A1Q2UY09 UBE2V1P2-201ENST00000397758 440 ntBASIC3.6□□□□□ -1.83
COL28A1Q2UY09 RPS3AP24-201ENST00000407896 734 ntBASIC3.6□□□□□ -1.83
COL28A1Q2UY09 RNU6-516P-201ENST00000411381 104 ntBASIC3.6□□□□□ -1.83
COL28A1Q2UY09 CDK8P2-201ENST00000415020 547 ntBASIC3.6□□□□□ -1.83
COL28A1Q2UY09 SSXP9-201ENST00000417503 292 ntBASIC3.6□□□□□ -1.83
COL28A1Q2UY09 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC3.6□□□□□ -1.83
COL28A1Q2UY09 AC006366.1-201ENST00000422002 759 ntBASIC3.6□□□□□ -1.83
COL28A1Q2UY09 COTL1P1-201ENST00000422309 375 ntBASIC3.6□□□□□ -1.83
COL28A1Q2UY09 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC3.6□□□□□ -1.83
COL28A1Q2UY09 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC3.6□□□□□ -1.83
COL28A1Q2UY09 AC090774.1-201ENST00000435925 246 ntBASIC3.6□□□□□ -1.83
COL28A1Q2UY09 FTH1P1-201ENST00000437933 532 ntBASIC3.6□□□□□ -1.83
COL28A1Q2UY09 HMGB1P37-201ENST00000439613 609 ntBASIC3.6□□□□□ -1.83
COL28A1Q2UY09 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.6□□□□□ -1.83
COL28A1Q2UY09 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC3.6□□□□□ -1.83
COL28A1Q2UY09 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC3.6□□□□□ -1.83
COL28A1Q2UY09 snoU13.4-201ENST00000458916 104 ntBASIC3.6□□□□□ -1.83
COL28A1Q2UY09 RPS3AP14-201ENST00000483907 780 ntBASIC3.6□□□□□ -1.83
COL28A1Q2UY09 MLLT10P2-201ENST00000506434 249 ntBASIC3.6□□□□□ -1.83
COL28A1Q2UY09 AC026784.1-201ENST00000507986 352 ntBASIC3.6□□□□□ -1.83
COL28A1Q2UY09 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC3.6□□□□□ -1.83
COL28A1Q2UY09 AC079140.3-201ENST00000511111 550 ntBASIC3.6□□□□□ -1.83
COL28A1Q2UY09 MTND3P5-201ENST00000512798 333 ntBASIC3.6□□□□□ -1.83
COL28A1Q2UY09 HMGN1P28-201ENST00000521340 364 ntBASIC3.6□□□□□ -1.83
COL28A1Q2UY09 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.6□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 89.1 ms