Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 RPL23AP41-201ENST00000484754 458 ntBASIC3.24□□□□□ -1.89
HOXA1P49639 RN7SL691P-201ENST00000494487 301 ntBASIC3.24□□□□□ -1.89
HOXA1P49639 ACTR3BP4-201ENST00000503033 1244 ntBASIC3.24□□□□□ -1.89
HOXA1P49639 AC093824.1-201ENST00000508796 343 ntBASIC3.24□□□□□ -1.89
HOXA1P49639 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXA1P49639 RNU6-1095P-201ENST00000516148 108 ntBASIC3.24□□□□□ -1.89
HOXA1P49639 RN7SKP83-201ENST00000516512 178 ntBASIC3.24□□□□□ -1.89
HOXA1P49639 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXA1P49639 NDUFB9P3-201ENST00000521269 501 ntBASIC3.24□□□□□ -1.89
HOXA1P49639 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXA1P49639 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXA1P49639 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXA1P49639 AC125611.2-201ENST00000551907 647 ntBASIC3.24□□□□□ -1.89
HOXA1P49639 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HOXA1P49639 SETP2-201ENST00000553886 926 ntBASIC3.24□□□□□ -1.89
HOXA1P49639 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXA1P49639 SUB1P2-201ENST00000556401 297 ntBASIC3.24□□□□□ -1.89
HOXA1P49639 AL133241.1-201ENST00000556832 487 ntBASIC3.24□□□□□ -1.89
HOXA1P49639 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.24□□□□□ -1.89
HOXA1P49639 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC3.24□□□□□ -1.89
HOXA1P49639 Z84480.1-201ENST00000605131 311 ntBASIC3.24□□□□□ -1.89
HOXA1P49639 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXA1P49639 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
HOXA1P49639 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXA1P49639 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXA1P49639 AC007256.1-201ENST00000392253 2765 ntBASIC3.24□□□□□ -1.89
HOXA1P49639 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.24□□□□□ -1.89
HOXA1P49639 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
HOXA1P49639 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HOXA1P49639 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
HOXA1P49639 PWAR6-201ENST00000552334 4618 ntBASIC3.24□□□□□ -1.89
HOXA1P49639 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
HOXA1P49639 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HOXA1P49639 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HOXA1P49639 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
HOXA1P49639 AL138713.1-201ENST00000624026 2130 ntBASIC3.23□□□□□ -1.89
HOXA1P49639 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
HOXA1P49639 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HOXA1P49639 Y_RNA.1-201ENST00000352915 104 ntBASIC3.23□□□□□ -1.89
HOXA1P49639 RNU5E-8P-201ENST00000363502 116 ntBASIC3.23□□□□□ -1.89
HOXA1P49639 Y_RNA.159-201ENST00000363674 87 ntBASIC3.23□□□□□ -1.89
HOXA1P49639 RNU6-169P-201ENST00000365336 107 ntBASIC3.23□□□□□ -1.89
HOXA1P49639 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC3.23□□□□□ -1.89
HOXA1P49639 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HOXA1P49639 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
HOXA1P49639 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC3.23□□□□□ -1.89
HOXA1P49639 RNU6-39P-201ENST00000384344 107 ntBASIC3.23□□□□□ -1.89
HOXA1P49639 RPL7P60-201ENST00000397636 735 ntBASIC3.23□□□□□ -1.89
HOXA1P49639 AL590002.1-201ENST00000406554 418 ntBASIC3.23□□□□□ -1.89
HOXA1P49639 HSPE1P8-201ENST00000406997 288 ntBASIC3.23□□□□□ -1.89
HOXA1P49639 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC3.23□□□□□ -1.89
HOXA1P49639 RPL7AP73-201ENST00000413490 353 ntBASIC3.23□□□□□ -1.89
HOXA1P49639 MTCO2P19-201ENST00000427513 598 ntBASIC3.23□□□□□ -1.89
HOXA1P49639 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXA1P49639 AC002486.1-201ENST00000435098 391 ntBASIC3.23□□□□□ -1.89
HOXA1P49639 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXA1P49639 AC132479.1-201ENST00000449160 144 ntBASIC3.23□□□□□ -1.89
HOXA1P49639 PSPHP1-201ENST00000450062 261 ntBASIC3.23□□□□□ -1.89
HOXA1P49639 AC003071.1-201ENST00000451219 789 ntBASIC3.23□□□□□ -1.89
HOXA1P49639 NANOGP10-201ENST00000453325 895 ntBASIC3.23□□□□□ -1.89
HOXA1P49639 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXA1P49639 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXA1P49639 AC007182.2-201ENST00000489251 402 ntBASIC3.23□□□□□ -1.89
HOXA1P49639 AC135721.1-201ENST00000497954 479 ntBASIC3.23□□□□□ -1.89
HOXA1P49639 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HOXA1P49639 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXA1P49639 AC009646.1-201ENST00000510455 318 ntBASIC3.23□□□□□ -1.89
HOXA1P49639 AC105914.1-201ENST00000511798 226 ntBASIC3.23□□□□□ -1.89
HOXA1P49639 FTH1P21-201ENST00000512179 511 ntBASIC3.23□□□□□ -1.89
HOXA1P49639 AC023141.12-201ENST00000512399 199 ntBASIC3.23□□□□□ -1.89
HOXA1P49639 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXA1P49639 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HOXA1P49639 OR4R3P-201ENST00000525084 838 ntBASIC3.23□□□□□ -1.89
HOXA1P49639 AP000857.1-201ENST00000532151 543 ntBASIC3.23□□□□□ -1.89
HOXA1P49639 SMILR-201ENST00000533992 553 ntTSL 4 BASIC3.23□□□□□ -1.89
HOXA1P49639 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXA1P49639 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXA1P49639 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXA1P49639 AL133153.1-201ENST00000557756 303 ntBASIC3.23□□□□□ -1.89
HOXA1P49639 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC3.23□□□□□ -1.89
HOXA1P49639 AC092325.1-201ENST00000566449 554 ntBASIC3.23□□□□□ -1.89
HOXA1P49639 AC022968.1-201ENST00000567372 442 ntBASIC3.23□□□□□ -1.89
HOXA1P49639 BNIP3P33-201ENST00000598912 569 ntBASIC3.23□□□□□ -1.89
HOXA1P49639 KC877982.1-201ENST00000602313 470 ntBASIC3.23□□□□□ -1.89
HOXA1P49639 AL161729.3-201ENST00000603533 673 ntBASIC3.23□□□□□ -1.89
HOXA1P49639 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXA1P49639 AC024941.1-201ENST00000612250 334 ntBASIC3.23□□□□□ -1.89
HOXA1P49639 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC3.23□□□□□ -1.89
HOXA1P49639 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC3.23□□□□□ -1.89
HOXA1P49639 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXA1P49639 AL359880.1-201ENST00000621879 266 ntBASIC3.23□□□□□ -1.89
HOXA1P49639 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXA1P49639 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
HOXA1P49639 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXA1P49639 AL513302.2-201ENST00000562313 1842 ntBASIC3.23□□□□□ -1.89
HOXA1P49639 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HOXA1P49639 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC3.23□□□□□ -1.89
HOXA1P49639 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
HOXA1P49639 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.23□□□□□ -1.89
HOXA1P49639 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC3.22□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 85.2 ms