Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.36□□□□□ -1.87
LHX1P48742 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.36□□□□□ -1.87
LHX1P48742 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
LHX1P48742 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.36□□□□□ -1.87
LHX1P48742 RNU6-1078P-201ENST00000364522 103 ntBASIC3.36□□□□□ -1.87
LHX1P48742 DEFB109C-201ENST00000382575 264 ntBASIC3.36□□□□□ -1.87
LHX1P48742 DEFB109B-201ENST00000382656 264 ntBASIC3.36□□□□□ -1.87
LHX1P48742 RNU6-114P-201ENST00000384704 105 ntBASIC3.36□□□□□ -1.87
LHX1P48742 SNORD15B-201ENST00000384714 146 ntBASIC3.36□□□□□ -1.87
LHX1P48742 U3.20-201ENST00000390909 217 ntBASIC3.36□□□□□ -1.87
LHX1P48742 CASP3-203ENST00000393588 677 ntTSL 4 BASIC3.36□□□□□ -1.87
LHX1P48742 EI24P2-201ENST00000397776 1076 ntBASIC3.36□□□□□ -1.87
LHX1P48742 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC3.36□□□□□ -1.87
LHX1P48742 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC3.36□□□□□ -1.87
LHX1P48742 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC3.36□□□□□ -1.87
LHX1P48742 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC3.36□□□□□ -1.87
LHX1P48742 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC3.36□□□□□ -1.87
LHX1P48742 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC3.36□□□□□ -1.87
LHX1P48742 OR4K11P-201ENST00000431829 904 ntBASIC3.36□□□□□ -1.87
LHX1P48742 BX679664.1-201ENST00000434429 253 ntBASIC3.36□□□□□ -1.87
LHX1P48742 ISCA1P2-201ENST00000438679 421 ntBASIC3.36□□□□□ -1.87
LHX1P48742 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.36□□□□□ -1.87
LHX1P48742 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC3.36□□□□□ -1.87
LHX1P48742 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.36□□□□□ -1.87
LHX1P48742 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC3.36□□□□□ -1.87
LHX1P48742 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.36□□□□□ -1.87
LHX1P48742 AC006445.1-201ENST00000491925 405 ntBASIC3.36□□□□□ -1.87
LHX1P48742 OR2A20P-203ENST00000498397 1268 ntBASIC3.36□□□□□ -1.87
LHX1P48742 AC111000.2-201ENST00000507775 550 ntBASIC3.36□□□□□ -1.87
LHX1P48742 SNORA31.8-201ENST00000516327 108 ntBASIC3.36□□□□□ -1.87
LHX1P48742 NDUFB9P3-201ENST00000521269 501 ntBASIC3.36□□□□□ -1.87
LHX1P48742 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC3.36□□□□□ -1.87
LHX1P48742 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
LHX1P48742 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
LHX1P48742 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
LHX1P48742 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC3.36□□□□□ -1.87
LHX1P48742 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC3.36□□□□□ -1.87
LHX1P48742 ZNF192P1-203ENST00000565888 810 ntBASIC3.36□□□□□ -1.87
LHX1P48742 AC012443.1-201ENST00000605605 231 ntBASIC3.36□□□□□ -1.87
LHX1P48742 AC090425.2-201ENST00000608818 501 ntBASIC3.36□□□□□ -1.87
LHX1P48742 RMST_8.1-201ENST00000610287 165 ntBASIC3.36□□□□□ -1.87
LHX1P48742 AC106028.5-201ENST00000610332 395 ntBASIC3.36□□□□□ -1.87
LHX1P48742 AC091953.5-201ENST00000622919 233 ntBASIC3.36□□□□□ -1.87
LHX1P48742 AC099506.2-201ENST00000623074 221 ntBASIC3.36□□□□□ -1.87
LHX1P48742 AC078883.4-201ENST00000623218 367 ntBASIC3.36□□□□□ -1.87
LHX1P48742 AC006927.3-201ENST00000638789 384 ntBASIC3.36□□□□□ -1.87
LHX1P48742 AL672296.1-201ENST00000427780 2158 ntBASIC3.36□□□□□ -1.87
LHX1P48742 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC3.36□□□□□ -1.87
LHX1P48742 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
LHX1P48742 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
LHX1P48742 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
LHX1P48742 AC006378.2-201ENST00000623178 2476 ntBASIC3.35□□□□□ -1.87
LHX1P48742 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
LHX1P48742 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
LHX1P48742 RNU6-769P-201ENST00000384407 104 ntBASIC3.35□□□□□ -1.87
LHX1P48742 RNY3P9-201ENST00000384727 106 ntBASIC3.35□□□□□ -1.87
LHX1P48742 SKINT1L-201ENST00000401057 817 ntBASIC3.35□□□□□ -1.87
LHX1P48742 AL136372.1-201ENST00000403060 228 ntBASIC3.35□□□□□ -1.87
LHX1P48742 RPS3AP24-201ENST00000407896 734 ntBASIC3.35□□□□□ -1.87
LHX1P48742 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC3.35□□□□□ -1.87
LHX1P48742 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC3.35□□□□□ -1.87
LHX1P48742 THAP5P1-201ENST00000439089 262 ntBASIC3.35□□□□□ -1.87
LHX1P48742 CYCSP32-201ENST00000440548 321 ntBASIC3.35□□□□□ -1.87
LHX1P48742 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC3.35□□□□□ -1.87
LHX1P48742 AL662791.1-201ENST00000441992 928 ntBASIC3.35□□□□□ -1.87
LHX1P48742 FAM103A2P-201ENST00000444122 354 ntBASIC3.35□□□□□ -1.87
LHX1P48742 ZNF736P5Y-201ENST00000451173 805 ntBASIC3.35□□□□□ -1.87
LHX1P48742 MTND1P9-201ENST00000453775 944 ntBASIC3.35□□□□□ -1.87
LHX1P48742 AC006539.3-201ENST00000454258 129 ntBASIC3.35□□□□□ -1.87
LHX1P48742 HMGN2P16-201ENST00000456802 261 ntBASIC3.35□□□□□ -1.87
LHX1P48742 RPL27AP5-201ENST00000469428 449 ntBASIC3.35□□□□□ -1.87
LHX1P48742 HMGB3P15-201ENST00000507326 574 ntBASIC3.35□□□□□ -1.87
LHX1P48742 AC022483.1-201ENST00000514020 567 ntBASIC3.35□□□□□ -1.87
LHX1P48742 AC026801.2-201ENST00000515352 425 ntBASIC3.35□□□□□ -1.87
LHX1P48742 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.35□□□□□ -1.87
LHX1P48742 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.35□□□□□ -1.87
LHX1P48742 AC007834.2-201ENST00000536310 343 ntBASIC3.35□□□□□ -1.87
LHX1P48742 EMP1-206ENST00000537612 505 ntTSL 3 BASIC3.35□□□□□ -1.87
LHX1P48742 OSBPL9P5-201ENST00000542581 171 ntBASIC3.35□□□□□ -1.87
LHX1P48742 SETP2-201ENST00000553886 926 ntBASIC3.35□□□□□ -1.87
LHX1P48742 PCMTD1P2-201ENST00000565017 355 ntBASIC3.35□□□□□ -1.87
LHX1P48742 MIR4325-201ENST00000583049 90 ntBASIC3.35□□□□□ -1.87
LHX1P48742 UBL5P2-201ENST00000583788 219 ntBASIC3.35□□□□□ -1.87
LHX1P48742 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC3.35□□□□□ -1.87
LHX1P48742 AP001429.1-201ENST00000602568 530 ntBASIC3.35□□□□□ -1.87
LHX1P48742 BCRP9-201ENST00000605312 388 ntBASIC3.35□□□□□ -1.87
LHX1P48742 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
LHX1P48742 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC3.35□□□□□ -1.87
LHX1P48742 AC079597.1-201ENST00000624306 508 ntBASIC3.35□□□□□ -1.87
LHX1P48742 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
LHX1P48742 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
LHX1P48742 AL513185.3-201ENST00000433335 1300 ntBASIC3.35□□□□□ -1.87
LHX1P48742 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
LHX1P48742 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
LHX1P48742 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.35□□□□□ -1.87
LHX1P48742 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.35□□□□□ -1.87
LHX1P48742 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
LHX1P48742 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
LHX1P48742 RIOK3P1-201ENST00000418778 1528 ntBASIC3.34□□□□□ -1.87
LHX1P48742 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.34□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms