Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 AC011825.1-201ENST00000484967 388 ntBASIC2.62□□□□□ -1.99
RFX3P48380 RPL30P5-201ENST00000494923 336 ntBASIC2.62□□□□□ -1.99
RFX3P48380 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
RFX3P48380 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC2.62□□□□□ -1.99
RFX3P48380 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC2.62□□□□□ -1.99
RFX3P48380 AC022483.1-201ENST00000514020 567 ntBASIC2.62□□□□□ -1.99
RFX3P48380 SNORA31.22-201ENST00000517204 135 ntBASIC2.62□□□□□ -1.99
RFX3P48380 SLC2A13P1-201ENST00000531560 322 ntBASIC2.62□□□□□ -1.99
RFX3P48380 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC2.62□□□□□ -1.99
RFX3P48380 AADACP1-206ENST00000561502 1193 ntBASIC2.62□□□□□ -1.99
RFX3P48380 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC2.62□□□□□ -1.99
RFX3P48380 ANKRD36BP2-206ENST00000575193 1245 ntBASIC2.62□□□□□ -1.99
RFX3P48380 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC2.62□□□□□ -1.99
RFX3P48380 AC079089.3-201ENST00000603094 673 ntBASIC2.62□□□□□ -1.99
RFX3P48380 AF129408.1-201ENST00000608767 431 ntBASIC2.62□□□□□ -1.99
RFX3P48380 AL138478.1-201ENST00000612252 832 ntBASIC2.62□□□□□ -1.99
RFX3P48380 AC004696.1-201ENST00000614345 607 ntBASIC2.62□□□□□ -1.99
RFX3P48380 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC2.62□□□□□ -1.99
RFX3P48380 AC079597.1-201ENST00000624306 508 ntBASIC2.62□□□□□ -1.99
RFX3P48380 AC004808.1-201ENST00000627671 721 ntBASIC2.62□□□□□ -1.99
RFX3P48380 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC2.62□□□□□ -1.99
RFX3P48380 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
RFX3P48380 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC2.62□□□□□ -1.99
RFX3P48380 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.61□□□□□ -1.99
RFX3P48380 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC2.61□□□□□ -1.99
RFX3P48380 AC092593.1-201ENST00000515413 1815 ntBASIC2.61□□□□□ -1.99
RFX3P48380 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
RFX3P48380 RNU5E-10P-201ENST00000363506 118 ntBASIC2.61□□□□□ -1.99
RFX3P48380 SNORD56.5-201ENST00000364281 72 ntBASIC2.61□□□□□ -1.99
RFX3P48380 SNORA18.3-201ENST00000384122 132 ntBASIC2.61□□□□□ -1.99
RFX3P48380 RNU6-198P-201ENST00000384258 104 ntBASIC2.61□□□□□ -1.99
RFX3P48380 RNU6-851P-201ENST00000384565 107 ntBASIC2.61□□□□□ -1.99
RFX3P48380 SNORA44-201ENST00000384584 132 ntBASIC2.61□□□□□ -1.99
RFX3P48380 SNORA40.2-201ENST00000390847 128 ntBASIC2.61□□□□□ -1.99
RFX3P48380 RPL19P1-201ENST00000411635 428 ntBASIC2.61□□□□□ -1.99
RFX3P48380 RAP1BP1-201ENST00000412709 553 ntBASIC2.61□□□□□ -1.99
RFX3P48380 AL161449.1-201ENST00000414531 1199 ntBASIC2.61□□□□□ -1.99
RFX3P48380 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC2.61□□□□□ -1.99
RFX3P48380 MTATP6P27-201ENST00000416987 621 ntBASIC2.61□□□□□ -1.99
RFX3P48380 OFD1P11Y-201ENST00000418213 1177 ntBASIC2.61□□□□□ -1.99
RFX3P48380 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC2.61□□□□□ -1.99
RFX3P48380 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC2.61□□□□□ -1.99
RFX3P48380 AC090774.1-201ENST00000435925 246 ntBASIC2.61□□□□□ -1.99
RFX3P48380 MTND4P6-201ENST00000438297 472 ntBASIC2.61□□□□□ -1.99
RFX3P48380 AC093156.1-201ENST00000440382 670 ntBASIC2.61□□□□□ -1.99
RFX3P48380 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC2.61□□□□□ -1.99
RFX3P48380 TRGVB-201ENST00000453257 471 ntBASIC2.61□□□□□ -1.99
RFX3P48380 AC234775.1-201ENST00000454247 670 ntBASIC2.61□□□□□ -1.99
RFX3P48380 MTCO3P11-201ENST00000455103 774 ntBASIC2.61□□□□□ -1.99
RFX3P48380 RPS27AP9-201ENST00000477681 438 ntBASIC2.61□□□□□ -1.99
RFX3P48380 RN7SL297P-201ENST00000483161 293 ntBASIC2.61□□□□□ -1.99
RFX3P48380 AC080014.1-201ENST00000496877 1201 ntBASIC2.61□□□□□ -1.99
RFX3P48380 RPL21P131-201ENST00000497298 483 ntBASIC2.61□□□□□ -1.99
RFX3P48380 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC2.61□□□□□ -1.99
RFX3P48380 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC2.61□□□□□ -1.99
RFX3P48380 AC091826.1-201ENST00000514065 313 ntBASIC2.61□□□□□ -1.99
RFX3P48380 AC093677.1-201ENST00000514414 678 ntBASIC2.61□□□□□ -1.99
RFX3P48380 MAL2-206ENST00000522187 547 ntTSL 4 BASIC2.61□□□□□ -1.99
RFX3P48380 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC2.61□□□□□ -1.99
RFX3P48380 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC2.61□□□□□ -1.99
RFX3P48380 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC2.61□□□□□ -1.99
RFX3P48380 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC2.61□□□□□ -1.99
RFX3P48380 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC2.61□□□□□ -1.99
RFX3P48380 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC2.61□□□□□ -1.99
RFX3P48380 ZNF861P-201ENST00000588126 639 ntBASIC2.61□□□□□ -1.99
RFX3P48380 AC013553.2-201ENST00000604244 589 ntBASIC2.61□□□□□ -1.99
RFX3P48380 AC021749.1-201ENST00000604322 607 ntBASIC2.61□□□□□ -1.99
RFX3P48380 AC090115.4-201ENST00000609970 188 ntBASIC2.61□□□□□ -1.99
RFX3P48380 AC010338.1-201ENST00000621823 717 ntBASIC2.61□□□□□ -1.99
RFX3P48380 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
RFX3P48380 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC2.61□□□□□ -1.99
RFX3P48380 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.61□□□□□ -1.99
RFX3P48380 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC2.61□□□□□ -1.99
RFX3P48380 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
RFX3P48380 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC2.61□□□□□ -1.99
RFX3P48380 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
RFX3P48380 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.6□□□□□ -1.99
RFX3P48380 RNU6-7-201ENST00000364784 107 ntBASIC2.6□□□□□ -1.99
RFX3P48380 RNU6-8-201ENST00000365467 107 ntBASIC2.6□□□□□ -1.99
RFX3P48380 RNU6-76P-201ENST00000384060 104 ntBASIC2.6□□□□□ -1.99
RFX3P48380 RNU6-1122P-201ENST00000384449 107 ntBASIC2.6□□□□□ -1.99
RFX3P48380 HMGB1P17-201ENST00000403495 628 ntBASIC2.6□□□□□ -1.99
RFX3P48380 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC2.6□□□□□ -1.99
RFX3P48380 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.6□□□□□ -1.99
RFX3P48380 MTCO2P25-201ENST00000447065 681 ntBASIC2.6□□□□□ -1.99
RFX3P48380 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC2.6□□□□□ -1.99
RFX3P48380 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.6□□□□□ -1.99
RFX3P48380 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC2.6□□□□□ -1.99
RFX3P48380 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC2.6□□□□□ -1.99
RFX3P48380 SNORA31.21-201ENST00000517180 77 ntBASIC2.6□□□□□ -1.99
RFX3P48380 AC087373.1-201ENST00000524920 491 ntBASIC2.6□□□□□ -1.99
RFX3P48380 AC005832.3-201ENST00000537929 631 ntBASIC2.6□□□□□ -1.99
RFX3P48380 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC2.6□□□□□ -1.99
RFX3P48380 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC2.6□□□□□ -1.99
RFX3P48380 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
RFX3P48380 VN1R83P-201ENST00000595685 445 ntBASIC2.6□□□□□ -1.99
RFX3P48380 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC2.6□□□□□ -1.99
RFX3P48380 AC010620.2-201ENST00000600135 313 ntBASIC2.6□□□□□ -1.99
RFX3P48380 AC024153.1-201ENST00000603103 365 ntBASIC2.6□□□□□ -1.99
RFX3P48380 HNRNPDLP4-201ENST00000605144 301 ntBASIC2.6□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms