Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC2.5□□□□□ -2.01
SCN4AP35499 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC2.5□□□□□ -2.01
SCN4AP35499 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC2.5□□□□□ -2.01
SCN4AP35499 AC104308.1-201ENST00000454621 333 ntBASIC2.5□□□□□ -2.01
SCN4AP35499 CCNB1IP1P3-201ENST00000454702 829 ntBASIC2.5□□□□□ -2.01
SCN4AP35499 AC004263.1-201ENST00000479327 332 ntBASIC2.5□□□□□ -2.01
SCN4AP35499 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC2.5□□□□□ -2.01
SCN4AP35499 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC2.5□□□□□ -2.01
SCN4AP35499 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC2.5□□□□□ -2.01
SCN4AP35499 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC2.5□□□□□ -2.01
SCN4AP35499 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC2.5□□□□□ -2.01
SCN4AP35499 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC2.5□□□□□ -2.01
SCN4AP35499 AC074051.3-201ENST00000570238 358 ntBASIC2.5□□□□□ -2.01
SCN4AP35499 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC2.5□□□□□ -2.01
SCN4AP35499 AP003973.1-201ENST00000604639 691 ntBASIC2.5□□□□□ -2.01
SCN4AP35499 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC2.5□□□□□ -2.01
SCN4AP35499 AC002064.3-201ENST00000623448 346 ntBASIC2.5□□□□□ -2.01
SCN4AP35499 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
SCN4AP35499 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.49□□□□□ -2.01
SCN4AP35499 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
SCN4AP35499 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC2.49□□□□□ -2.01
SCN4AP35499 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC2.49□□□□□ -2.01
SCN4AP35499 AL929288.2-201ENST00000446368 407 ntBASIC2.49□□□□□ -2.01
SCN4AP35499 HMGN3P1-201ENST00000453847 193 ntBASIC2.49□□□□□ -2.01
SCN4AP35499 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC2.49□□□□□ -2.01
SCN4AP35499 RPL21P103-201ENST00000479921 488 ntBASIC2.49□□□□□ -2.01
SCN4AP35499 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC2.49□□□□□ -2.01
SCN4AP35499 AC104629.1-201ENST00000494226 508 ntBASIC2.49□□□□□ -2.01
SCN4AP35499 RNU5A-7P-201ENST00000515979 116 ntBASIC2.49□□□□□ -2.01
SCN4AP35499 RNU6-416P-201ENST00000516265 103 ntBASIC2.49□□□□□ -2.01
SCN4AP35499 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC2.49□□□□□ -2.01
SCN4AP35499 AC110588.1-201ENST00000559699 137 ntBASIC2.49□□□□□ -2.01
SCN4AP35499 NIFKP8-201ENST00000560500 874 ntBASIC2.49□□□□□ -2.01
SCN4AP35499 AL356280.1-201ENST00000603614 379 ntBASIC2.49□□□□□ -2.01
SCN4AP35499 AC018754.1-201ENST00000607486 925 ntBASIC2.49□□□□□ -2.01
SCN4AP35499 AC091046.2-201ENST00000620775 665 ntBASIC2.49□□□□□ -2.01
SCN4AP35499 AC068880.4-201ENST00000623082 495 ntBASIC2.49□□□□□ -2.01
SCN4AP35499 AC093591.3-201ENST00000634516 308 ntBASIC2.49□□□□□ -2.01
SCN4AP35499 AC132825.7-201ENST00000638744 335 ntBASIC2.49□□□□□ -2.01
SCN4AP35499 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
SCN4AP35499 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
SCN4AP35499 AL136520.1-201ENST00000600311 1322 ntBASIC2.49□□□□□ -2.01
SCN4AP35499 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
SCN4AP35499 SNORA63.3-201ENST00000362682 132 ntBASIC2.49□□□□□ -2.01
SCN4AP35499 RNA5SP181-201ENST00000410246 98 ntBASIC2.49□□□□□ -2.01
SCN4AP35499 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.49□□□□□ -2.01
SCN4AP35499 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC2.49□□□□□ -2.01
SCN4AP35499 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
SCN4AP35499 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC2.49□□□□□ -2.01
SCN4AP35499 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC2.49□□□□□ -2.01
SCN4AP35499 AP003467.2-201ENST00000520175 319 ntBASIC2.49□□□□□ -2.01
SCN4AP35499 MIR3912-201ENST00000577566 105 ntBASIC2.49□□□□□ -2.01
SCN4AP35499 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC2.49□□□□□ -2.01
SCN4AP35499 AL670379.6-201ENST00000603753 252 ntBASIC2.49□□□□□ -2.01
SCN4AP35499 AL670379.11-201ENST00000604059 253 ntBASIC2.49□□□□□ -2.01
SCN4AP35499 AL670379.10-201ENST00000604330 253 ntBASIC2.49□□□□□ -2.01
SCN4AP35499 AC008162.1-201ENST00000604718 254 ntBASIC2.49□□□□□ -2.01
SCN4AP35499 AL670379.1-201ENST00000604752 252 ntBASIC2.49□□□□□ -2.01
SCN4AP35499 AL670379.2-201ENST00000604983 252 ntBASIC2.49□□□□□ -2.01
SCN4AP35499 AL670379.5-201ENST00000605253 252 ntBASIC2.49□□□□□ -2.01
SCN4AP35499 AL670379.4-201ENST00000605279 254 ntBASIC2.49□□□□□ -2.01
SCN4AP35499 AL670379.12-201ENST00000605291 253 ntBASIC2.49□□□□□ -2.01
SCN4AP35499 AL670379.8-201ENST00000605353 252 ntBASIC2.49□□□□□ -2.01
SCN4AP35499 AL670379.9-201ENST00000605428 253 ntBASIC2.49□□□□□ -2.01
SCN4AP35499 AL670379.7-201ENST00000605823 252 ntBASIC2.49□□□□□ -2.01
SCN4AP35499 AL583856.2-201ENST00000606298 543 ntBASIC2.49□□□□□ -2.01
SCN4AP35499 AC106858.1-201ENST00000637497 429 ntBASIC2.49□□□□□ -2.01
SCN4AP35499 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.49□□□□□ -2.01
SCN4AP35499 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.48□□□□□ -2.01
SCN4AP35499 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC2.48□□□□□ -2.01
SCN4AP35499 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC2.48□□□□□ -2.01
SCN4AP35499 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC2.48□□□□□ -2.01
SCN4AP35499 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC2.48□□□□□ -2.01
SCN4AP35499 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC2.48□□□□□ -2.01
SCN4AP35499 MIR499A-201ENST00000384903 122 ntBASIC2.48□□□□□ -2.01
SCN4AP35499 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC2.48□□□□□ -2.01
SCN4AP35499 AL445685.2-201ENST00000422551 342 ntBASIC2.48□□□□□ -2.01
SCN4AP35499 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC2.48□□□□□ -2.01
SCN4AP35499 GXYLT1P1-201ENST00000446657 490 ntBASIC2.48□□□□□ -2.01
SCN4AP35499 AC010301.1-201ENST00000473936 355 ntBASIC2.48□□□□□ -2.01
SCN4AP35499 AC015908.1-201ENST00000478739 476 ntBASIC2.48□□□□□ -2.01
SCN4AP35499 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC2.48□□□□□ -2.01
SCN4AP35499 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
SCN4AP35499 RNF138P1-201ENST00000502765 546 ntBASIC2.48□□□□□ -2.01
SCN4AP35499 AIG1P1-201ENST00000503376 148 ntBASIC2.48□□□□□ -2.01
SCN4AP35499 RNU6-56P-201ENST00000516986 93 ntBASIC2.48□□□□□ -2.01
SCN4AP35499 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC2.48□□□□□ -2.01
SCN4AP35499 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC2.48□□□□□ -2.01
SCN4AP35499 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC2.48□□□□□ -2.01
SCN4AP35499 MIR6864-201ENST00000617935 70 ntBASIC2.48□□□□□ -2.01
SCN4AP35499 AC022079.2-201ENST00000619739 566 ntBASIC2.48□□□□□ -2.01
SCN4AP35499 AC093875.1-201ENST00000623688 504 ntBASIC2.48□□□□□ -2.01
SCN4AP35499 AL512506.2-201ENST00000624472 458 ntBASIC2.48□□□□□ -2.01
SCN4AP35499 AC092608.3-201ENST00000625017 386 ntBASIC2.48□□□□□ -2.01
SCN4AP35499 CYP3A51P-201ENST00000633513 256 ntBASIC2.48□□□□□ -2.01
SCN4AP35499 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
SCN4AP35499 AC025263.3-201ENST00000622965 1396 ntBASIC2.47□□□□□ -2.01
SCN4AP35499 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC2.47□□□□□ -2.01
SCN4AP35499 SNORA51.6-201ENST00000384151 125 ntBASIC2.47□□□□□ -2.01
SCN4AP35499 MIR7-2-201ENST00000384970 110 ntBASIC2.47□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 88.4 ms