Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 CR848007.1-201ENST00000442354 1699 ntBASIC1.83□□□□□ -2.12
HLA-DMBP28068 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
HLA-DMBP28068 MTCO1P23-201ENST00000415223 1526 ntBASIC1.83□□□□□ -2.12
HLA-DMBP28068 U3.12-201ENST00000364498 214 ntBASIC1.83□□□□□ -2.12
HLA-DMBP28068 RNA5SP126-201ENST00000365092 109 ntBASIC1.83□□□□□ -2.12
HLA-DMBP28068 RNU6-301P-201ENST00000384277 107 ntBASIC1.83□□□□□ -2.12
HLA-DMBP28068 SNORD116-23-201ENST00000384645 92 ntBASIC1.83□□□□□ -2.12
HLA-DMBP28068 MIR27B-201ENST00000385129 97 ntBASIC1.83□□□□□ -2.12
HLA-DMBP28068 AF274854.1-201ENST00000413236 615 ntBASIC1.83□□□□□ -2.12
HLA-DMBP28068 FCF1P2-201ENST00000415284 583 ntBASIC1.83□□□□□ -2.12
HLA-DMBP28068 MORF4L1P6-201ENST00000418771 268 ntBASIC1.83□□□□□ -2.12
HLA-DMBP28068 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC1.83□□□□□ -2.12
HLA-DMBP28068 MTND4LP7-201ENST00000431728 294 ntBASIC1.83□□□□□ -2.12
HLA-DMBP28068 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC1.83□□□□□ -2.12
HLA-DMBP28068 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC1.83□□□□□ -2.12
HLA-DMBP28068 RAC1P7-201ENST00000445367 377 ntBASIC1.83□□□□□ -2.12
HLA-DMBP28068 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC1.83□□□□□ -2.12
HLA-DMBP28068 NDUFA5P7-201ENST00000452914 242 ntBASIC1.83□□□□□ -2.12
HLA-DMBP28068 RPL31P60-201ENST00000478450 367 ntBASIC1.83□□□□□ -2.12
HLA-DMBP28068 RPL21P47-201ENST00000483696 477 ntBASIC1.83□□□□□ -2.12
HLA-DMBP28068 AC090096.1-201ENST00000489168 390 ntBASIC1.83□□□□□ -2.12
HLA-DMBP28068 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC1.83□□□□□ -2.12
HLA-DMBP28068 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
HLA-DMBP28068 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
HLA-DMBP28068 AC084024.2-201ENST00000503480 791 ntBASIC1.83□□□□□ -2.12
HLA-DMBP28068 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
HLA-DMBP28068 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
HLA-DMBP28068 AL359273.1-201ENST00000510918 627 ntBASIC1.83□□□□□ -2.12
HLA-DMBP28068 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC1.83□□□□□ -2.12
HLA-DMBP28068 AC112673.1-201ENST00000513168 575 ntBASIC1.83□□□□□ -2.12
HLA-DMBP28068 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC1.83□□□□□ -2.12
HLA-DMBP28068 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
HLA-DMBP28068 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
HLA-DMBP28068 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC1.83□□□□□ -2.12
HLA-DMBP28068 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC1.83□□□□□ -2.12
HLA-DMBP28068 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC1.83□□□□□ -2.12
HLA-DMBP28068 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC1.83□□□□□ -2.12
HLA-DMBP28068 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC1.83□□□□□ -2.12
HLA-DMBP28068 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC1.83□□□□□ -2.12
HLA-DMBP28068 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
HLA-DMBP28068 AC105224.1-201ENST00000587055 421 ntBASIC1.83□□□□□ -2.12
HLA-DMBP28068 OR1M4P-201ENST00000589199 287 ntBASIC1.83□□□□□ -2.12
HLA-DMBP28068 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC1.83□□□□□ -2.12
HLA-DMBP28068 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC1.83□□□□□ -2.12
HLA-DMBP28068 AC007621.1-201ENST00000604544 437 ntBASIC1.83□□□□□ -2.12
HLA-DMBP28068 AL450270.1-201ENST00000606160 391 ntBASIC1.83□□□□□ -2.12
HLA-DMBP28068 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC1.83□□□□□ -2.12
HLA-DMBP28068 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC1.83□□□□□ -2.12
HLA-DMBP28068 AC079597.1-201ENST00000624306 508 ntBASIC1.83□□□□□ -2.12
HLA-DMBP28068 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC1.83□□□□□ -2.12
HLA-DMBP28068 AC243829.7-201ENST00000633081 225 ntBASIC1.83□□□□□ -2.12
HLA-DMBP28068 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC1.83□□□□□ -2.12
HLA-DMBP28068 AC012321.1-201ENST00000561622 1588 ntBASIC1.82□□□□□ -2.12
HLA-DMBP28068 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC1.82□□□□□ -2.12
HLA-DMBP28068 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
HLA-DMBP28068 RNU1-105P-201ENST00000363470 161 ntBASIC1.82□□□□□ -2.12
HLA-DMBP28068 RNU6-461P-201ENST00000364195 107 ntBASIC1.82□□□□□ -2.12
HLA-DMBP28068 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
HLA-DMBP28068 SNORD65C-201ENST00000390962 71 ntBASIC1.82□□□□□ -2.12
HLA-DMBP28068 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC1.82□□□□□ -2.12
HLA-DMBP28068 HNRNPDLP1-201ENST00000412834 550 ntBASIC1.82□□□□□ -2.12
HLA-DMBP28068 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC1.82□□□□□ -2.12
HLA-DMBP28068 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC1.82□□□□□ -2.12
HLA-DMBP28068 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
HLA-DMBP28068 ARPC3P1-201ENST00000437218 533 ntBASIC1.82□□□□□ -2.12
HLA-DMBP28068 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC1.82□□□□□ -2.12
HLA-DMBP28068 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC1.82□□□□□ -2.12
HLA-DMBP28068 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC1.82□□□□□ -2.12
HLA-DMBP28068 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
HLA-DMBP28068 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC1.82□□□□□ -2.12
HLA-DMBP28068 MTND3P4-201ENST00000453537 303 ntBASIC1.82□□□□□ -2.12
HLA-DMBP28068 RFC5P1-201ENST00000454419 874 ntBASIC1.82□□□□□ -2.12
HLA-DMBP28068 CDC42P1-201ENST00000456658 548 ntBASIC1.82□□□□□ -2.12
HLA-DMBP28068 RPS3P1-201ENST00000456781 192 ntBASIC1.82□□□□□ -2.12
HLA-DMBP28068 RNU6-420P-201ENST00000458780 107 ntBASIC1.82□□□□□ -2.12
HLA-DMBP28068 snoU13.28-201ENST00000459235 104 ntBASIC1.82□□□□□ -2.12
HLA-DMBP28068 AC087588.1-201ENST00000462203 316 ntBASIC1.82□□□□□ -2.12
HLA-DMBP28068 RPS15AP34-201ENST00000487776 387 ntBASIC1.82□□□□□ -2.12
HLA-DMBP28068 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
HLA-DMBP28068 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC1.82□□□□□ -2.12
HLA-DMBP28068 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC1.82□□□□□ -2.12
HLA-DMBP28068 AC025768.1-201ENST00000510057 267 ntBASIC1.82□□□□□ -2.12
HLA-DMBP28068 AC109464.2-201ENST00000510242 943 ntBASIC1.82□□□□□ -2.12
HLA-DMBP28068 AC048346.1-201ENST00000510247 144 ntBASIC1.82□□□□□ -2.12
HLA-DMBP28068 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC1.82□□□□□ -2.12
HLA-DMBP28068 RNA5SP135-201ENST00000517019 125 ntBASIC1.82□□□□□ -2.12
HLA-DMBP28068 RPL7P20-201ENST00000520308 745 ntBASIC1.82□□□□□ -2.12
HLA-DMBP28068 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC1.82□□□□□ -2.12
HLA-DMBP28068 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
HLA-DMBP28068 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC1.82□□□□□ -2.12
HLA-DMBP28068 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
HLA-DMBP28068 NIFKP8-201ENST00000560500 874 ntBASIC1.82□□□□□ -2.12
HLA-DMBP28068 AC090888.1-201ENST00000561335 1141 ntBASIC1.82□□□□□ -2.12
HLA-DMBP28068 MIR4298-201ENST00000584380 73 ntBASIC1.82□□□□□ -2.12
HLA-DMBP28068 AC015688.2-201ENST00000584523 262 ntBASIC1.82□□□□□ -2.12
HLA-DMBP28068 KATNBL1P1-201ENST00000605192 748 ntBASIC1.82□□□□□ -2.12
HLA-DMBP28068 AL136363.1-201ENST00000605349 337 ntBASIC1.82□□□□□ -2.12
HLA-DMBP28068 U4.3-201ENST00000621047 82 ntBASIC1.82□□□□□ -2.12
HLA-DMBP28068 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC1.82□□□□□ -2.12
HLA-DMBP28068 AC097714.1-201ENST00000511272 1647 ntBASIC1.81□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 80.8 ms