Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC2.15□□□□□ -2.07
COL5A3P25940 AL355802.4-201ENST00000607635 548 ntBASIC2.15□□□□□ -2.07
COL5A3P25940 MIR7973-1-201ENST00000614683 76 ntBASIC2.15□□□□□ -2.07
COL5A3P25940 uc_338.9-201ENST00000617424 182 ntBASIC2.15□□□□□ -2.07
COL5A3P25940 AC012150.2-201ENST00000621300 544 ntBASIC2.15□□□□□ -2.07
COL5A3P25940 AC020923.1-201ENST00000624021 917 ntBASIC2.15□□□□□ -2.07
COL5A3P25940 AC116563.2-201ENST00000624751 535 ntBASIC2.15□□□□□ -2.07
COL5A3P25940 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC2.15□□□□□ -2.07
COL5A3P25940 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC2.15□□□□□ -2.07
COL5A3P25940 RNF6P1-201ENST00000444889 1784 ntBASIC2.15□□□□□ -2.07
COL5A3P25940 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.15□□□□□ -2.07
COL5A3P25940 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2.14□□□□□ -2.07
COL5A3P25940 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
COL5A3P25940 RPL31P2-201ENST00000413849 377 ntBASIC2.14□□□□□ -2.07
COL5A3P25940 TRAPPC13P1-201ENST00000435991 1062 ntBASIC2.14□□□□□ -2.07
COL5A3P25940 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC2.14□□□□□ -2.07
COL5A3P25940 AC092473.1-201ENST00000441098 221 ntBASIC2.14□□□□□ -2.07
COL5A3P25940 AC005912.1-201ENST00000495392 255 ntBASIC2.14□□□□□ -2.07
COL5A3P25940 SUMO1P1-201ENST00000497904 306 ntBASIC2.14□□□□□ -2.07
COL5A3P25940 AC111193.1-201ENST00000504097 155 ntBASIC2.14□□□□□ -2.07
COL5A3P25940 RNU1-40P-201ENST00000516816 164 ntBASIC2.14□□□□□ -2.07
COL5A3P25940 RNU1-97P-201ENST00000516872 164 ntBASIC2.14□□□□□ -2.07
COL5A3P25940 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC2.14□□□□□ -2.07
COL5A3P25940 HSPE1P20-201ENST00000538133 289 ntBASIC2.14□□□□□ -2.07
COL5A3P25940 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.14□□□□□ -2.07
COL5A3P25940 MIR4419B-201ENST00000577260 68 ntBASIC2.14□□□□□ -2.07
COL5A3P25940 MIR4446-201ENST00000578505 67 ntBASIC2.14□□□□□ -2.07
COL5A3P25940 MIR4448-201ENST00000584360 86 ntBASIC2.14□□□□□ -2.07
COL5A3P25940 AC040174.2-201ENST00000602701 465 ntBASIC2.14□□□□□ -2.07
COL5A3P25940 uc_338.5-201ENST00000611839 155 ntBASIC2.14□□□□□ -2.07
COL5A3P25940 AC104307.1-201ENST00000616142 196 ntBASIC2.14□□□□□ -2.07
COL5A3P25940 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
COL5A3P25940 AC006213.5-201ENST00000619673 288 ntBASIC2.14□□□□□ -2.07
COL5A3P25940 AC106730.3-201ENST00000624568 641 ntBASIC2.14□□□□□ -2.07
COL5A3P25940 RNA5SP27-201ENST00000363839 119 ntBASIC2.14□□□□□ -2.07
COL5A3P25940 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC2.14□□□□□ -2.07
COL5A3P25940 Z86062.1-201ENST00000406773 777 ntBASIC2.14□□□□□ -2.07
COL5A3P25940 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC2.14□□□□□ -2.07
COL5A3P25940 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC2.14□□□□□ -2.07
COL5A3P25940 MTND4P15-201ENST00000437913 1033 ntBASIC2.14□□□□□ -2.07
COL5A3P25940 AP002345.1-201ENST00000456493 928 ntBASIC2.14□□□□□ -2.07
COL5A3P25940 AL049829.1-201ENST00000465411 156 ntBASIC2.14□□□□□ -2.07
COL5A3P25940 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC2.14□□□□□ -2.07
COL5A3P25940 COL6A4P2-205ENST00000509855 506 ntBASIC2.14□□□□□ -2.07
COL5A3P25940 RNU6-56P-201ENST00000516986 93 ntBASIC2.14□□□□□ -2.07
COL5A3P25940 MTND2P7-201ENST00000521337 640 ntBASIC2.14□□□□□ -2.07
COL5A3P25940 AP003049.1-201ENST00000529418 457 ntBASIC2.14□□□□□ -2.07
COL5A3P25940 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC2.14□□□□□ -2.07
COL5A3P25940 AL049779.4-201ENST00000604500 156 ntBASIC2.14□□□□□ -2.07
COL5A3P25940 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC2.14□□□□□ -2.07
COL5A3P25940 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
COL5A3P25940 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC2.13□□□□□ -2.07
COL5A3P25940 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.13□□□□□ -2.07
COL5A3P25940 TAS2R15P-201ENST00000390674 928 ntBASIC2.13□□□□□ -2.07
COL5A3P25940 RNU1-101P-201ENST00000391171 127 ntBASIC2.13□□□□□ -2.07
COL5A3P25940 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
COL5A3P25940 UBE2V1P15-201ENST00000407776 448 ntBASIC2.13□□□□□ -2.07
COL5A3P25940 RNU2-68P-201ENST00000410878 191 ntBASIC2.13□□□□□ -2.07
COL5A3P25940 AL031663.1-201ENST00000437445 219 ntBASIC2.13□□□□□ -2.07
COL5A3P25940 AL691517.1-201ENST00000440833 1235 ntBASIC2.13□□□□□ -2.07
COL5A3P25940 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC2.13□□□□□ -2.07
COL5A3P25940 SNRPFP4-201ENST00000456366 242 ntBASIC2.13□□□□□ -2.07
COL5A3P25940 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC2.13□□□□□ -2.07
COL5A3P25940 MTCO1P31-201ENST00000506355 492 ntBASIC2.13□□□□□ -2.07
COL5A3P25940 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC2.13□□□□□ -2.07
COL5A3P25940 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC2.13□□□□□ -2.07
COL5A3P25940 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC2.13□□□□□ -2.07
COL5A3P25940 LINC00557-201ENST00000563184 1279 ntBASIC2.13□□□□□ -2.07
COL5A3P25940 AL049838.1-201ENST00000563647 981 ntBASIC2.13□□□□□ -2.07
COL5A3P25940 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.13□□□□□ -2.07
COL5A3P25940 SNORA4-201ENST00000584302 138 ntBASIC2.13□□□□□ -2.07
COL5A3P25940 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC2.13□□□□□ -2.07
COL5A3P25940 AC092474.3-201ENST00000603022 568 ntBASIC2.13□□□□□ -2.07
COL5A3P25940 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
COL5A3P25940 RNU6-650P-201ENST00000365658 111 ntBASIC2.12□□□□□ -2.07
COL5A3P25940 RNU6-244P-201ENST00000391028 104 ntBASIC2.12□□□□□ -2.07
COL5A3P25940 MTND4LP14-201ENST00000429447 288 ntBASIC2.12□□□□□ -2.07
COL5A3P25940 CABYRP1-201ENST00000465493 1045 ntBASIC2.12□□□□□ -2.07
COL5A3P25940 AC104472.2-201ENST00000469035 601 ntBASIC2.12□□□□□ -2.07
COL5A3P25940 MTCYBP37-201ENST00000510642 1133 ntBASIC2.12□□□□□ -2.07
COL5A3P25940 AC027338.1-201ENST00000514840 825 ntBASIC2.12□□□□□ -2.07
COL5A3P25940 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC2.12□□□□□ -2.07
COL5A3P25940 RNU6-1004P-201ENST00000516584 111 ntBASIC2.12□□□□□ -2.07
COL5A3P25940 POLR2KP1-201ENST00000553226 168 ntBASIC2.12□□□□□ -2.07
COL5A3P25940 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC2.12□□□□□ -2.07
COL5A3P25940 PCNAP1-202ENST00000595299 752 ntBASIC2.12□□□□□ -2.07
COL5A3P25940 AL450270.1-201ENST00000606160 391 ntBASIC2.12□□□□□ -2.07
COL5A3P25940 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
COL5A3P25940 Y_RNA.112-201ENST00000363250 102 ntBASIC2.11□□□□□ -2.07
COL5A3P25940 Y_RNA.224-201ENST00000364308 111 ntBASIC2.11□□□□□ -2.07
COL5A3P25940 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
COL5A3P25940 RNU2-72P-201ENST00000411175 163 ntBASIC2.11□□□□□ -2.07
COL5A3P25940 RPL17P12-201ENST00000413391 526 ntBASIC2.11□□□□□ -2.07
COL5A3P25940 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC2.11□□□□□ -2.07
COL5A3P25940 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC2.11□□□□□ -2.07
COL5A3P25940 ELOCP11-201ENST00000436690 332 ntBASIC2.11□□□□□ -2.07
COL5A3P25940 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.11□□□□□ -2.07
COL5A3P25940 ELOCP16-201ENST00000444494 332 ntBASIC2.11□□□□□ -2.07
COL5A3P25940 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC2.11□□□□□ -2.07
COL5A3P25940 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC2.11□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms