Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
USP3Q9Y6I4 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
USP3Q9Y6I4 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
USP3Q9Y6I4 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
USP3Q9Y6I4 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
USP3Q9Y6I4 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
USP3Q9Y6I4 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
USP3Q9Y6I4 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC5.45□□□□□ -1.54
USP3Q9Y6I4 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC5.45□□□□□ -1.54
USP3Q9Y6I4 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
USP3Q9Y6I4 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC5.45□□□□□ -1.54
USP3Q9Y6I4 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
USP3Q9Y6I4 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC5.45□□□□□ -1.54
USP3Q9Y6I4 RNU6-1155P-201ENST00000363554 107 ntBASIC5.45□□□□□ -1.54
USP3Q9Y6I4 Y_RNA.183-201ENST00000363882 113 ntBASIC5.45□□□□□ -1.54
USP3Q9Y6I4 RNU6-1303P-201ENST00000364841 107 ntBASIC5.45□□□□□ -1.54
USP3Q9Y6I4 SNORA5.1-201ENST00000384275 131 ntBASIC5.45□□□□□ -1.54
USP3Q9Y6I4 MIR628-201ENST00000385229 95 ntBASIC5.45□□□□□ -1.54
USP3Q9Y6I4 AL591034.2-201ENST00000402839 359 ntBASIC5.45□□□□□ -1.54
USP3Q9Y6I4 RNU6ATAC21P-201ENST00000408656 126 ntBASIC5.45□□□□□ -1.54
USP3Q9Y6I4 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC5.45□□□□□ -1.54
USP3Q9Y6I4 TRAPPC2P10-201ENST00000415662 323 ntBASIC5.45□□□□□ -1.54
USP3Q9Y6I4 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC5.45□□□□□ -1.54
USP3Q9Y6I4 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC5.45□□□□□ -1.54
USP3Q9Y6I4 AC004383.1-201ENST00000438135 289 ntBASIC5.45□□□□□ -1.54
USP3Q9Y6I4 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC5.45□□□□□ -1.54
USP3Q9Y6I4 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC5.45□□□□□ -1.54
USP3Q9Y6I4 AC108161.1-201ENST00000461060 402 ntBASIC5.45□□□□□ -1.54
USP3Q9Y6I4 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC5.45□□□□□ -1.54
USP3Q9Y6I4 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC5.45□□□□□ -1.54
USP3Q9Y6I4 RNU6-1095P-201ENST00000516148 108 ntBASIC5.45□□□□□ -1.54
USP3Q9Y6I4 RNU6-111P-201ENST00000517179 105 ntBASIC5.45□□□□□ -1.54
USP3Q9Y6I4 IGKV2D-23-201ENST00000518179 286 ntBASIC5.45□□□□□ -1.54
USP3Q9Y6I4 AC034114.1-201ENST00000520293 285 ntBASIC5.45□□□□□ -1.54
USP3Q9Y6I4 AC022080.3-201ENST00000544433 482 ntBASIC5.45□□□□□ -1.54
USP3Q9Y6I4 HMGN2P6-201ENST00000551091 273 ntBASIC5.45□□□□□ -1.54
USP3Q9Y6I4 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC5.45□□□□□ -1.54
USP3Q9Y6I4 AC004584.2-201ENST00000570407 410 ntBASIC5.45□□□□□ -1.54
USP3Q9Y6I4 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC5.45□□□□□ -1.54
USP3Q9Y6I4 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC5.45□□□□□ -1.54
USP3Q9Y6I4 MIR548AC-201ENST00000585049 88 ntBASIC5.45□□□□□ -1.54
USP3Q9Y6I4 AC068790.4-201ENST00000602474 263 ntBASIC5.45□□□□□ -1.54
USP3Q9Y6I4 AC008962.1-201ENST00000605729 304 ntBASIC5.45□□□□□ -1.54
USP3Q9Y6I4 MIR15A-201ENST00000607334 83 ntBASIC5.45□□□□□ -1.54
USP3Q9Y6I4 AP005432.2-201ENST00000608162 586 ntBASIC5.45□□□□□ -1.54
USP3Q9Y6I4 MIR7155-201ENST00000615925 56 ntBASIC5.45□□□□□ -1.54
USP3Q9Y6I4 FTX_2.1-201ENST00000618816 94 ntBASIC5.45□□□□□ -1.54
USP3Q9Y6I4 AL360270.2-201ENST00000562952 5985 ntBASIC5.45□□□□□ -1.54
USP3Q9Y6I4 AC020633.1-201ENST00000468439 2247 ntBASIC5.45□□□□□ -1.54
USP3Q9Y6I4 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
USP3Q9Y6I4 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
USP3Q9Y6I4 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
USP3Q9Y6I4 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
USP3Q9Y6I4 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC5.45□□□□□ -1.54
USP3Q9Y6I4 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC5.44□□□□□ -1.54
USP3Q9Y6I4 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC5.44□□□□□ -1.54
USP3Q9Y6I4 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
USP3Q9Y6I4 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
USP3Q9Y6I4 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC5.44□□□□□ -1.54
USP3Q9Y6I4 AC114947.2-201ENST00000565748 2125 ntBASIC5.44□□□□□ -1.54
USP3Q9Y6I4 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
USP3Q9Y6I4 Y_RNA.29-201ENST00000362570 113 ntBASIC5.44□□□□□ -1.54
USP3Q9Y6I4 RNA5SP507-201ENST00000363603 121 ntBASIC5.44□□□□□ -1.54
USP3Q9Y6I4 U3.35-201ENST00000408405 208 ntBASIC5.44□□□□□ -1.54
USP3Q9Y6I4 RNU6-607P-201ENST00000411283 108 ntBASIC5.44□□□□□ -1.54
USP3Q9Y6I4 AC007098.1-201ENST00000420122 367 ntBASIC5.44□□□□□ -1.54
USP3Q9Y6I4 PPP1R11P2-201ENST00000423543 382 ntBASIC5.44□□□□□ -1.54
USP3Q9Y6I4 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
USP3Q9Y6I4 AC090774.1-201ENST00000435925 246 ntBASIC5.44□□□□□ -1.54
USP3Q9Y6I4 KNOP1P3-201ENST00000446933 426 ntBASIC5.44□□□□□ -1.54
USP3Q9Y6I4 PRDX3P3-201ENST00000447765 522 ntBASIC5.44□□□□□ -1.54
USP3Q9Y6I4 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
USP3Q9Y6I4 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC5.44□□□□□ -1.54
USP3Q9Y6I4 RPL7P5-201ENST00000471472 736 ntBASIC5.44□□□□□ -1.54
USP3Q9Y6I4 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC5.44□□□□□ -1.54
USP3Q9Y6I4 AC026784.1-201ENST00000507986 352 ntBASIC5.44□□□□□ -1.54
USP3Q9Y6I4 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC5.44□□□□□ -1.54
USP3Q9Y6I4 HIGD1AP3-201ENST00000515857 278 ntBASIC5.44□□□□□ -1.54
USP3Q9Y6I4 RNU5B-3P-201ENST00000516601 115 ntBASIC5.44□□□□□ -1.54
USP3Q9Y6I4 AC109329.1-201ENST00000518744 317 ntBASIC5.44□□□□□ -1.54
USP3Q9Y6I4 AC009852.2-201ENST00000567898 485 ntBASIC5.44□□□□□ -1.54
USP3Q9Y6I4 MIR4512-201ENST00000583257 77 ntBASIC5.44□□□□□ -1.54
USP3Q9Y6I4 AC012669.1-201ENST00000603209 283 ntBASIC5.44□□□□□ -1.54
USP3Q9Y6I4 AC211433.2-201ENST00000608433 387 ntBASIC5.44□□□□□ -1.54
USP3Q9Y6I4 AC064801.1-201ENST00000612025 407 ntBASIC5.44□□□□□ -1.54
USP3Q9Y6I4 RPSAP73-201ENST00000614820 330 ntBASIC5.44□□□□□ -1.54
USP3Q9Y6I4 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC5.44□□□□□ -1.54
USP3Q9Y6I4 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
USP3Q9Y6I4 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
USP3Q9Y6I4 ZNF72P-201ENST00000425869 1908 ntBASIC5.44□□□□□ -1.54
USP3Q9Y6I4 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
USP3Q9Y6I4 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
USP3Q9Y6I4 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
USP3Q9Y6I4 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
USP3Q9Y6I4 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
USP3Q9Y6I4 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC5.43□□□□□ -1.54
USP3Q9Y6I4 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
USP3Q9Y6I4 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
USP3Q9Y6I4 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC5.43□□□□□ -1.54
USP3Q9Y6I4 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms