Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 BX005214.3-202ENST00000619809 325 ntBASIC5.92□□□□□ -1.46
CHMP3Q9Y3E7 AC055839.1-201ENST00000634467 498 ntBASIC5.92□□□□□ -1.46
CHMP3Q9Y3E7 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CHMP3Q9Y3E7 AC107027.3-201ENST00000565095 3473 ntBASIC5.92□□□□□ -1.46
CHMP3Q9Y3E7 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC5.92□□□□□ -1.46
CHMP3Q9Y3E7 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC5.92□□□□□ -1.46
CHMP3Q9Y3E7 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC5.92□□□□□ -1.46
CHMP3Q9Y3E7 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CHMP3Q9Y3E7 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CHMP3Q9Y3E7 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CHMP3Q9Y3E7 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CHMP3Q9Y3E7 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC5.91□□□□□ -1.46
CHMP3Q9Y3E7 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
CHMP3Q9Y3E7 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
CHMP3Q9Y3E7 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CHMP3Q9Y3E7 Y_RNA.496-201ENST00000384444 101 ntBASIC5.91□□□□□ -1.46
CHMP3Q9Y3E7 RNU6-1127P-201ENST00000384580 107 ntBASIC5.91□□□□□ -1.46
CHMP3Q9Y3E7 AL360182.1-201ENST00000397433 468 ntBASIC5.91□□□□□ -1.46
CHMP3Q9Y3E7 MIR450B-201ENST00000401182 78 ntBASIC5.91□□□□□ -1.46
CHMP3Q9Y3E7 RNU4-46P-201ENST00000410818 138 ntBASIC5.91□□□□□ -1.46
CHMP3Q9Y3E7 CTSL3P-202ENST00000412179 788 ntBASIC5.91□□□□□ -1.46
CHMP3Q9Y3E7 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC5.91□□□□□ -1.46
CHMP3Q9Y3E7 RPL35AP21-201ENST00000437667 333 ntBASIC5.91□□□□□ -1.46
CHMP3Q9Y3E7 RPS17P13-201ENST00000448974 407 ntBASIC5.91□□□□□ -1.46
CHMP3Q9Y3E7 CECR9-201ENST00000453421 199 ntBASIC5.91□□□□□ -1.46
CHMP3Q9Y3E7 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC5.91□□□□□ -1.46
CHMP3Q9Y3E7 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC5.91□□□□□ -1.46
CHMP3Q9Y3E7 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC5.91□□□□□ -1.46
CHMP3Q9Y3E7 AC073073.1-201ENST00000493920 463 ntBASIC5.91□□□□□ -1.46
CHMP3Q9Y3E7 AC079140.5-201ENST00000507882 310 ntBASIC5.91□□□□□ -1.46
CHMP3Q9Y3E7 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC5.91□□□□□ -1.46
CHMP3Q9Y3E7 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC5.91□□□□□ -1.46
CHMP3Q9Y3E7 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC5.91□□□□□ -1.46
CHMP3Q9Y3E7 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.91□□□□□ -1.46
CHMP3Q9Y3E7 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC5.91□□□□□ -1.46
CHMP3Q9Y3E7 DYNLL1P4-201ENST00000549314 266 ntBASIC5.91□□□□□ -1.46
CHMP3Q9Y3E7 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC5.91□□□□□ -1.46
CHMP3Q9Y3E7 MIR6864-201ENST00000617935 70 ntBASIC5.91□□□□□ -1.46
CHMP3Q9Y3E7 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC5.91□□□□□ -1.46
CHMP3Q9Y3E7 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
CHMP3Q9Y3E7 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC5.91□□□□□ -1.46
CHMP3Q9Y3E7 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
CHMP3Q9Y3E7 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
CHMP3Q9Y3E7 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
CHMP3Q9Y3E7 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
CHMP3Q9Y3E7 BTBD10P1-201ENST00000549824 1352 ntBASIC5.91□□□□□ -1.46
CHMP3Q9Y3E7 MFF-206ENST00000392059 1710 ntTSL 5 BASIC5.91□□□□□ -1.46
CHMP3Q9Y3E7 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC5.91□□□□□ -1.46
CHMP3Q9Y3E7 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CHMP3Q9Y3E7 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.46
CHMP3Q9Y3E7 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
CHMP3Q9Y3E7 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
CHMP3Q9Y3E7 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
CHMP3Q9Y3E7 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.46
CHMP3Q9Y3E7 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC5.9□□□□□ -1.46
CHMP3Q9Y3E7 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC5.9□□□□□ -1.46
CHMP3Q9Y3E7 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC5.9□□□□□ -1.46
CHMP3Q9Y3E7 RNU6-1078P-201ENST00000364522 103 ntBASIC5.9□□□□□ -1.46
CHMP3Q9Y3E7 AC104333.2-201ENST00000422630 192 ntBASIC5.9□□□□□ -1.46
CHMP3Q9Y3E7 AC068287.1-201ENST00000430283 295 ntBASIC5.9□□□□□ -1.46
CHMP3Q9Y3E7 AC105402.2-201ENST00000438503 358 ntBASIC5.9□□□□□ -1.46
CHMP3Q9Y3E7 AL162388.1-201ENST00000450912 352 ntBASIC5.9□□□□□ -1.46
CHMP3Q9Y3E7 GSTA11P-201ENST00000452866 669 ntBASIC5.9□□□□□ -1.46
CHMP3Q9Y3E7 AC116533.1-201ENST00000459748 321 ntBASIC5.9□□□□□ -1.46
CHMP3Q9Y3E7 RNU6-27P-201ENST00000516146 107 ntBASIC5.9□□□□□ -1.46
CHMP3Q9Y3E7 AP002404.1-201ENST00000532005 451 ntBASIC5.9□□□□□ -1.46
CHMP3Q9Y3E7 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC5.9□□□□□ -1.46
CHMP3Q9Y3E7 MTCO3P23-201ENST00000561363 289 ntBASIC5.9□□□□□ -1.46
CHMP3Q9Y3E7 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC5.9□□□□□ -1.46
CHMP3Q9Y3E7 AL451044.1-201ENST00000604867 238 ntBASIC5.9□□□□□ -1.46
CHMP3Q9Y3E7 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC5.9□□□□□ -1.46
CHMP3Q9Y3E7 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC5.9□□□□□ -1.46
CHMP3Q9Y3E7 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC5.9□□□□□ -1.46
CHMP3Q9Y3E7 MIR378J-201ENST00000611988 109 ntBASIC5.9□□□□□ -1.46
CHMP3Q9Y3E7 MIR6798-201ENST00000612887 67 ntBASIC5.9□□□□□ -1.46
CHMP3Q9Y3E7 MIR6128-201ENST00000615528 109 ntBASIC5.9□□□□□ -1.46
CHMP3Q9Y3E7 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC5.9□□□□□ -1.46
CHMP3Q9Y3E7 MIR7641-1-201ENST00000627518 61 ntBASIC5.9□□□□□ -1.46
CHMP3Q9Y3E7 AC073869.10-201ENST00000642016 354 ntBASIC5.9□□□□□ -1.46
CHMP3Q9Y3E7 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC5.9□□□□□ -1.47
CHMP3Q9Y3E7 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.47
CHMP3Q9Y3E7 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.47
CHMP3Q9Y3E7 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
CHMP3Q9Y3E7 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
CHMP3Q9Y3E7 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CHMP3Q9Y3E7 ZNF33CP-201ENST00000432492 2030 ntBASIC5.89□□□□□ -1.47
CHMP3Q9Y3E7 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC5.89□□□□□ -1.47
CHMP3Q9Y3E7 ANKRD26P2-201ENST00000445530 1710 ntBASIC5.89□□□□□ -1.47
CHMP3Q9Y3E7 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
CHMP3Q9Y3E7 Y_RNA.153-201ENST00000363615 91 ntBASIC5.89□□□□□ -1.47
CHMP3Q9Y3E7 Y_RNA.176-201ENST00000363815 109 ntBASIC5.89□□□□□ -1.47
CHMP3Q9Y3E7 RNU1-32P-201ENST00000363937 159 ntBASIC5.89□□□□□ -1.47
CHMP3Q9Y3E7 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC5.89□□□□□ -1.47
CHMP3Q9Y3E7 Y_RNA.404-201ENST00000383978 102 ntBASIC5.89□□□□□ -1.47
CHMP3Q9Y3E7 RNU4-25P-201ENST00000410569 230 ntBASIC5.89□□□□□ -1.47
CHMP3Q9Y3E7 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC5.89□□□□□ -1.47
CHMP3Q9Y3E7 BX682237.1-201ENST00000415016 335 ntBASIC5.89□□□□□ -1.47
CHMP3Q9Y3E7 AL669831.1-202ENST00000428504 417 ntBASIC5.89□□□□□ -1.47
CHMP3Q9Y3E7 EEF1A1P1-201ENST00000447052 739 ntBASIC5.89□□□□□ -1.47
CHMP3Q9Y3E7 AL583843.1-201ENST00000456070 346 ntBASIC5.89□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 90.2 ms