Protein–RNA interactions for Protein: Q9ULD4

BRPF3, Bromodomain and PHD finger-containing protein 3, humanhuman

Predictions only

Length 1,205 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRPF3Q9ULD4 AC100870.1-201ENST00000522035 505 ntBASIC5.68□□□□□ -1.5
BRPF3Q9ULD4 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC5.68□□□□□ -1.5
BRPF3Q9ULD4 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC5.68□□□□□ -1.5
BRPF3Q9ULD4 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC5.68□□□□□ -1.5
BRPF3Q9ULD4 AL352979.3-201ENST00000553515 247 ntBASIC5.68□□□□□ -1.5
BRPF3Q9ULD4 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC5.68□□□□□ -1.5
BRPF3Q9ULD4 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC5.68□□□□□ -1.5
BRPF3Q9ULD4 AC006254.3-201ENST00000603353 884 ntBASIC5.68□□□□□ -1.5
BRPF3Q9ULD4 AP000942.4-201ENST00000604811 241 ntBASIC5.68□□□□□ -1.5
BRPF3Q9ULD4 AC084781.2-201ENST00000615568 161 ntBASIC5.68□□□□□ -1.5
BRPF3Q9ULD4 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
BRPF3Q9ULD4 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC5.68□□□□□ -1.5
BRPF3Q9ULD4 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
BRPF3Q9ULD4 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
BRPF3Q9ULD4 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 SAMMSON-226ENST00000642089 1582 ntBASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 AC121333.1-201ENST00000567488 2709 ntBASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 MIR369-201ENST00000362155 70 ntBASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 Y_RNA.339-201ENST00000365325 102 ntBASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 RNU6-474P-201ENST00000384243 107 ntBASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 SNORD116-29-201ENST00000384516 83 ntBASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 MIR606-201ENST00000384851 96 ntBASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 MIR559-201ENST00000385188 96 ntBASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 SNORA75.4-201ENST00000391278 119 ntBASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 U3.30-201ENST00000391308 210 ntBASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 RNU4-46P-201ENST00000410818 138 ntBASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 RNU4-14P-201ENST00000410858 122 ntBASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 AC020550.1-201ENST00000447385 163 ntBASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 Y_RNA.639-201ENST00000458981 102 ntBASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 RN7SL329P-201ENST00000467740 299 ntBASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 AC027575.1-201ENST00000481064 460 ntBASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 RNU6-709P-201ENST00000517257 104 ntBASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 AC103783.1-201ENST00000520506 373 ntBASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 AP000889.2-201ENST00000532684 490 ntBASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 AP000763.2-201ENST00000540641 163 ntBASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 AC011487.3-201ENST00000593607 453 ntBASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 AC245389.1-201ENST00000605141 529 ntBASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 RMST_9.1-201ENST00000619945 193 ntBASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 AL357559.1-201ENST00000622228 274 ntBASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
BRPF3Q9ULD4 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC5.66□□□□□ -1.5
BRPF3Q9ULD4 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
BRPF3Q9ULD4 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC5.66□□□□□ -1.5
BRPF3Q9ULD4 RN7SKP167-201ENST00000411047 285 ntBASIC5.66□□□□□ -1.5
BRPF3Q9ULD4 RNU6-387P-201ENST00000411331 105 ntBASIC5.66□□□□□ -1.5
BRPF3Q9ULD4 VN1R36P-201ENST00000414936 291 ntBASIC5.66□□□□□ -1.5
BRPF3Q9ULD4 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC5.66□□□□□ -1.5
BRPF3Q9ULD4 CKS1BP5-201ENST00000434172 273 ntBASIC5.66□□□□□ -1.5
BRPF3Q9ULD4 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC5.66□□□□□ -1.5
BRPF3Q9ULD4 PRPF38AP2-201ENST00000438179 851 ntBASIC5.66□□□□□ -1.5
BRPF3Q9ULD4 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC5.66□□□□□ -1.5
BRPF3Q9ULD4 RPL35AP28-201ENST00000459730 331 ntBASIC5.66□□□□□ -1.5
BRPF3Q9ULD4 IGLV2-34-201ENST00000490007 283 ntBASIC5.66□□□□□ -1.5
BRPF3Q9ULD4 RNU6-1088P-201ENST00000516850 104 ntBASIC5.66□□□□□ -1.5
BRPF3Q9ULD4 Y_RNA.719-201ENST00000517156 106 ntBASIC5.66□□□□□ -1.5
BRPF3Q9ULD4 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC5.66□□□□□ -1.5
BRPF3Q9ULD4 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC5.66□□□□□ -1.5
BRPF3Q9ULD4 TOMM20P2-201ENST00000540082 421 ntBASIC5.66□□□□□ -1.5
BRPF3Q9ULD4 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC5.66□□□□□ -1.5
BRPF3Q9ULD4 AC012182.1-201ENST00000570133 895 ntBASIC5.66□□□□□ -1.5
BRPF3Q9ULD4 SNORA74C-1-201ENST00000580726 201 ntBASIC5.66□□□□□ -1.5
BRPF3Q9ULD4 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC5.66□□□□□ -1.5
BRPF3Q9ULD4 AL627309.6-201ENST00000606857 840 ntBASIC5.66□□□□□ -1.5
BRPF3Q9ULD4 AC211433.2-201ENST00000608433 387 ntBASIC5.66□□□□□ -1.5
BRPF3Q9ULD4 Z82243.1-201ENST00000609432 473 ntBASIC5.66□□□□□ -1.5
BRPF3Q9ULD4 TUG1_2.1-201ENST00000614234 87 ntBASIC5.66□□□□□ -1.5
BRPF3Q9ULD4 SNHG22-203ENST00000617833 660 ntBASIC5.66□□□□□ -1.5
BRPF3Q9ULD4 AC007546.1-201ENST00000619452 559 ntBASIC5.66□□□□□ -1.5
BRPF3Q9ULD4 AL359757.2-201ENST00000624309 274 ntBASIC5.66□□□□□ -1.5
BRPF3Q9ULD4 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
BRPF3Q9ULD4 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
BRPF3Q9ULD4 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC5.66□□□□□ -1.5
BRPF3Q9ULD4 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
BRPF3Q9ULD4 TPTE2P4-201ENST00000258589 1605 ntBASIC5.66□□□□□ -1.5
BRPF3Q9ULD4 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
BRPF3Q9ULD4 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
BRPF3Q9ULD4 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 94.5 ms