Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC3.6□□□□□ -1.83
VPS28Q9UK41 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.6□□□□□ -1.83
VPS28Q9UK41 TAAR7P-201ENST00000436141 242 ntBASIC3.6□□□□□ -1.83
VPS28Q9UK41 UBE2D3P1-201ENST00000436669 444 ntBASIC3.6□□□□□ -1.83
VPS28Q9UK41 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.6□□□□□ -1.83
VPS28Q9UK41 AC009237.8-201ENST00000445492 379 ntBASIC3.6□□□□□ -1.83
VPS28Q9UK41 RPL36AP33-201ENST00000450395 310 ntBASIC3.6□□□□□ -1.83
VPS28Q9UK41 PRSS3P4-201ENST00000453323 162 ntBASIC3.6□□□□□ -1.83
VPS28Q9UK41 AC025518.1-201ENST00000479856 347 ntBASIC3.6□□□□□ -1.83
VPS28Q9UK41 RPL23AP41-201ENST00000484754 458 ntBASIC3.6□□□□□ -1.83
VPS28Q9UK41 FCF1P3-201ENST00000496394 590 ntBASIC3.6□□□□□ -1.83
VPS28Q9UK41 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
VPS28Q9UK41 SNORA31.1-201ENST00000515993 133 ntBASIC3.6□□□□□ -1.83
VPS28Q9UK41 SNORA31.5-201ENST00000516190 133 ntBASIC3.6□□□□□ -1.83
VPS28Q9UK41 RNU6-1256P-201ENST00000516539 103 ntBASIC3.6□□□□□ -1.83
VPS28Q9UK41 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC3.6□□□□□ -1.83
VPS28Q9UK41 AP000907.2-201ENST00000530827 353 ntBASIC3.6□□□□□ -1.83
VPS28Q9UK41 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.6□□□□□ -1.83
VPS28Q9UK41 PCMTD1P2-201ENST00000565017 355 ntBASIC3.6□□□□□ -1.83
VPS28Q9UK41 TPMTP1-201ENST00000592307 737 ntBASIC3.6□□□□□ -1.83
VPS28Q9UK41 AC007038.2-201ENST00000608095 740 ntBASIC3.6□□□□□ -1.83
VPS28Q9UK41 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
VPS28Q9UK41 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC3.6□□□□□ -1.83
VPS28Q9UK41 AL356266.1-201ENST00000623311 483 ntBASIC3.6□□□□□ -1.83
VPS28Q9UK41 AC027309.3-201ENST00000623419 351 ntBASIC3.6□□□□□ -1.83
VPS28Q9UK41 AC079248.2-201ENST00000623779 326 ntBASIC3.6□□□□□ -1.83
VPS28Q9UK41 AC092192.1-201ENST00000633154 1018 ntBASIC3.6□□□□□ -1.83
VPS28Q9UK41 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC3.6□□□□□ -1.83
VPS28Q9UK41 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.83
VPS28Q9UK41 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
VPS28Q9UK41 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
VPS28Q9UK41 AC005183.1-201ENST00000603687 1979 ntBASIC3.6□□□□□ -1.83
VPS28Q9UK41 AC073073.2-201ENST00000609827 2578 ntBASIC3.59□□□□□ -1.83
VPS28Q9UK41 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.83
VPS28Q9UK41 TPTE2P4-201ENST00000258589 1605 ntBASIC3.59□□□□□ -1.83
VPS28Q9UK41 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
VPS28Q9UK41 Y_RNA.97-201ENST00000363094 102 ntBASIC3.59□□□□□ -1.83
VPS28Q9UK41 RNA5SP42-201ENST00000364278 115 ntBASIC3.59□□□□□ -1.83
VPS28Q9UK41 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.59□□□□□ -1.83
VPS28Q9UK41 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.83
VPS28Q9UK41 TXNP7-201ENST00000406296 293 ntBASIC3.59□□□□□ -1.83
VPS28Q9UK41 RNU6-55P-201ENST00000411092 107 ntBASIC3.59□□□□□ -1.83
VPS28Q9UK41 RNU6-954P-201ENST00000411355 107 ntBASIC3.59□□□□□ -1.83
VPS28Q9UK41 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC3.59□□□□□ -1.83
VPS28Q9UK41 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC3.59□□□□□ -1.83
VPS28Q9UK41 ATP5JP1-201ENST00000431631 322 ntBASIC3.59□□□□□ -1.83
VPS28Q9UK41 AC109583.1-201ENST00000432156 268 ntBASIC3.59□□□□□ -1.83
VPS28Q9UK41 AC092573.2-201ENST00000434546 243 ntBASIC3.59□□□□□ -1.83
VPS28Q9UK41 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC3.59□□□□□ -1.83
VPS28Q9UK41 RPL37P21-201ENST00000435890 276 ntBASIC3.59□□□□□ -1.83
VPS28Q9UK41 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.59□□□□□ -1.83
VPS28Q9UK41 RNU7-59P-201ENST00000459101 61 ntBASIC3.59□□□□□ -1.83
VPS28Q9UK41 AC010468.1-201ENST00000461022 817 ntBASIC3.59□□□□□ -1.83
VPS28Q9UK41 RN7SL594P-201ENST00000470590 287 ntBASIC3.59□□□□□ -1.83
VPS28Q9UK41 RPL7P49-201ENST00000471402 708 ntBASIC3.59□□□□□ -1.83
VPS28Q9UK41 RPL30P6-201ENST00000475925 342 ntBASIC3.59□□□□□ -1.83
VPS28Q9UK41 RPS15AP36-201ENST00000492022 382 ntBASIC3.59□□□□□ -1.83
VPS28Q9UK41 AC098862.1-201ENST00000504991 413 ntBASIC3.59□□□□□ -1.83
VPS28Q9UK41 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.59□□□□□ -1.83
VPS28Q9UK41 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.59□□□□□ -1.83
VPS28Q9UK41 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC3.59□□□□□ -1.83
VPS28Q9UK41 RNU2-27P-201ENST00000516185 142 ntBASIC3.59□□□□□ -1.83
VPS28Q9UK41 RNU6-232P-201ENST00000517144 64 ntBASIC3.59□□□□□ -1.83
VPS28Q9UK41 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC3.59□□□□□ -1.83
VPS28Q9UK41 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC3.59□□□□□ -1.83
VPS28Q9UK41 CASP1P1-201ENST00000526345 212 ntBASIC3.59□□□□□ -1.83
VPS28Q9UK41 AP000857.1-201ENST00000532151 543 ntBASIC3.59□□□□□ -1.83
VPS28Q9UK41 AC011602.1-201ENST00000546484 331 ntBASIC3.59□□□□□ -1.83
VPS28Q9UK41 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC3.59□□□□□ -1.83
VPS28Q9UK41 AL133153.1-201ENST00000557756 303 ntBASIC3.59□□□□□ -1.83
VPS28Q9UK41 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.59□□□□□ -1.83
VPS28Q9UK41 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.59□□□□□ -1.83
VPS28Q9UK41 AC012435.1-202ENST00000568772 240 ntBASIC3.59□□□□□ -1.83
VPS28Q9UK41 MIR3944-201ENST00000581277 108 ntBASIC3.59□□□□□ -1.83
VPS28Q9UK41 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC3.59□□□□□ -1.83
VPS28Q9UK41 MTCYBP22-201ENST00000603788 447 ntBASIC3.59□□□□□ -1.83
VPS28Q9UK41 AC069200.1-201ENST00000609511 323 ntBASIC3.59□□□□□ -1.83
VPS28Q9UK41 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC3.59□□□□□ -1.83
VPS28Q9UK41 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC3.59□□□□□ -1.83
VPS28Q9UK41 MIR7844-201ENST00000616161 122 ntBASIC3.59□□□□□ -1.83
VPS28Q9UK41 AC012150.2-201ENST00000621300 544 ntBASIC3.59□□□□□ -1.83
VPS28Q9UK41 AC127502.3-201ENST00000636170 1206 ntBASIC3.59□□□□□ -1.83
VPS28Q9UK41 U6.105-201ENST00000637379 88 ntBASIC3.59□□□□□ -1.83
VPS28Q9UK41 MIR7153-201ENST00000637758 57 ntBASIC3.59□□□□□ -1.83
VPS28Q9UK41 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
VPS28Q9UK41 AC021755.1-201ENST00000559747 1447 ntBASIC3.59□□□□□ -1.84
VPS28Q9UK41 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.84
VPS28Q9UK41 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.84
VPS28Q9UK41 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.58□□□□□ -1.84
VPS28Q9UK41 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.58□□□□□ -1.84
VPS28Q9UK41 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
VPS28Q9UK41 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.58□□□□□ -1.84
VPS28Q9UK41 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
VPS28Q9UK41 SNORA63.1-201ENST00000362493 131 ntBASIC3.58□□□□□ -1.84
VPS28Q9UK41 RNU4-35P-201ENST00000362588 141 ntBASIC3.58□□□□□ -1.84
VPS28Q9UK41 RNU6-501P-201ENST00000364072 100 ntBASIC3.58□□□□□ -1.84
VPS28Q9UK41 CD2-201ENST00000369477 478 ntTSL 2 BASIC3.58□□□□□ -1.84
VPS28Q9UK41 MIR183-201ENST00000384958 110 ntBASIC3.58□□□□□ -1.84
VPS28Q9UK41 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
VPS28Q9UK41 AC110754.1-201ENST00000399740 601 ntBASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms