Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC079168.2-201ENST00000453977 416 ntBASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 AP1S2P1-201ENST00000457344 379 ntBASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 AC092324.1-201ENST00000468671 324 ntBASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 AP001025.2-201ENST00000490908 477 ntBASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 AC034222.1-201ENST00000494052 532 ntBASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 RPS27P27-201ENST00000498779 255 ntBASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 AK3P4-201ENST00000504283 583 ntBASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 AC002456.2-201ENST00000509356 380 ntBASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 RNA5SP446-201ENST00000515955 82 ntBASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 Y_RNA.661-201ENST00000516003 99 ntBASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 RNY3P15-201ENST00000516297 97 ntBASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 RNU6-1213P-201ENST00000517075 94 ntBASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 Y_RNA.721-201ENST00000517207 102 ntBASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 RNA5SP454-201ENST00000517231 127 ntBASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 AC044860.2-201ENST00000561005 179 ntBASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 AL356432.3-201ENST00000568952 465 ntBASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 HMGB2P1-201ENST00000591146 634 ntBASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 AC104695.3-201ENST00000604052 296 ntBASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 AC123768.4-201ENST00000616244 701 ntBASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 AC098657.3-201ENST00000620434 263 ntBASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 ATM-230ENST00000640388 578 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 AC022031.1-201ENST00000585985 2593 ntBASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 RPL23AP57-201ENST00000332361 466 ntBASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 RN7SKP115-201ENST00000363177 317 ntBASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 RNU6-853P-201ENST00000364306 107 ntBASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 RNU6-744P-201ENST00000365557 107 ntBASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 Y_RNA.396-201ENST00000383949 103 ntBASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 RNU6-1316P-201ENST00000384242 108 ntBASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 Y_RNA.645-201ENST00000391229 102 ntBASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 AL139396.1-201ENST00000421137 167 ntBASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 RPL23AP50-201ENST00000434149 455 ntBASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 PSMD10P3-201ENST00000437000 448 ntBASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 PTMAP6-201ENST00000439110 327 ntBASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 SCARNA22-201ENST00000503991 125 ntBASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 AC097473.1-201ENST00000508142 408 ntBASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 RNU6-408P-201ENST00000515910 100 ntBASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 AC008562.1-201ENST00000521763 330 ntBASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 AP005435.4-201ENST00000529514 284 ntBASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 AL118558.2-201ENST00000556294 238 ntBASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 MAGOH2P-202ENST00000584384 429 ntBASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 AC133644.2-201ENST00000608142 540 ntBASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 WDR75-207ENST00000631047 270 ntTSL 5 BASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 AC119744.1-201ENST00000454746 1715 ntBASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 AC134882.1-201ENST00000603738 1676 ntBASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC5.3□□□□□ -1.56
CCDC39Q9UFE4 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 XPOTP1-201ENST00000443317 2398 ntBASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 GNAS-202ENST00000306090 477 ntTSL 5 BASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 RNU6-552P-201ENST00000362869 119 ntBASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 RNU6-1252P-201ENST00000363054 104 ntBASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 RNU6-903P-201ENST00000391270 109 ntBASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 ARL5AP1-201ENST00000418991 388 ntBASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 RPS20P5-201ENST00000434808 360 ntBASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 H2AFZP5-201ENST00000446960 382 ntBASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 AL392103.1-201ENST00000447000 198 ntBASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 HMGB1P15-201ENST00000453854 435 ntBASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 RN7SL329P-201ENST00000467740 299 ntBASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 172.9 ms