Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 RN7SL330P-201ENST00000469709 307 ntBASIC3.01□□□□□ -1.93
LHX3Q9UBR4 AC011825.1-201ENST00000484967 388 ntBASIC3.01□□□□□ -1.93
LHX3Q9UBR4 AC080014.1-201ENST00000496877 1201 ntBASIC3.01□□□□□ -1.93
LHX3Q9UBR4 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC3.01□□□□□ -1.93
LHX3Q9UBR4 AC114967.1-201ENST00000504890 259 ntBASIC3.01□□□□□ -1.93
LHX3Q9UBR4 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.01□□□□□ -1.93
LHX3Q9UBR4 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC3.01□□□□□ -1.93
LHX3Q9UBR4 AC105185.1-201ENST00000518705 535 ntBASIC3.01□□□□□ -1.93
LHX3Q9UBR4 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.01□□□□□ -1.93
LHX3Q9UBR4 AC068657.1-201ENST00000520807 306 ntBASIC3.01□□□□□ -1.93
LHX3Q9UBR4 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC3.01□□□□□ -1.93
LHX3Q9UBR4 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC3.01□□□□□ -1.93
LHX3Q9UBR4 OR5G4P-201ENST00000525251 760 ntBASIC3.01□□□□□ -1.93
LHX3Q9UBR4 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC3.01□□□□□ -1.93
LHX3Q9UBR4 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
LHX3Q9UBR4 AC022080.3-201ENST00000544433 482 ntBASIC3.01□□□□□ -1.93
LHX3Q9UBR4 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
LHX3Q9UBR4 APAF1-207ENST00000547743 651 ntTSL 3 BASIC3.01□□□□□ -1.93
LHX3Q9UBR4 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC3.01□□□□□ -1.93
LHX3Q9UBR4 DUXAP1-201ENST00000556632 463 ntBASIC3.01□□□□□ -1.93
LHX3Q9UBR4 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.01□□□□□ -1.93
LHX3Q9UBR4 H3F3AP1-201ENST00000559984 334 ntBASIC3.01□□□□□ -1.93
LHX3Q9UBR4 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.01□□□□□ -1.93
LHX3Q9UBR4 MIR3921-201ENST00000577308 85 ntBASIC3.01□□□□□ -1.93
LHX3Q9UBR4 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
LHX3Q9UBR4 MIR4760-201ENST00000585040 80 ntBASIC3.01□□□□□ -1.93
LHX3Q9UBR4 AL391001.1-201ENST00000602747 715 ntBASIC3.01□□□□□ -1.93
LHX3Q9UBR4 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.01□□□□□ -1.93
LHX3Q9UBR4 RNU6-88P-201ENST00000606801 100 ntBASIC3.01□□□□□ -1.93
LHX3Q9UBR4 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.01□□□□□ -1.93
LHX3Q9UBR4 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.01□□□□□ -1.93
LHX3Q9UBR4 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.01□□□□□ -1.93
LHX3Q9UBR4 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.01□□□□□ -1.93
LHX3Q9UBR4 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
LHX3Q9UBR4 AC000403.1-201ENST00000613696 3585 ntBASIC3□□□□□ -1.93
LHX3Q9UBR4 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3□□□□□ -1.93
LHX3Q9UBR4 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3□□□□□ -1.93
LHX3Q9UBR4 GNG5P1-201ENST00000255500 204 ntBASIC3□□□□□ -1.93
LHX3Q9UBR4 RNU6-744P-201ENST00000365557 107 ntBASIC3□□□□□ -1.93
LHX3Q9UBR4 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3□□□□□ -1.93
LHX3Q9UBR4 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC3□□□□□ -1.93
LHX3Q9UBR4 RNU6-1316P-201ENST00000384242 108 ntBASIC3□□□□□ -1.93
LHX3Q9UBR4 FAT1P1-201ENST00000406588 507 ntBASIC3□□□□□ -1.93
LHX3Q9UBR4 MIR320C1-201ENST00000408566 88 ntBASIC3□□□□□ -1.93
LHX3Q9UBR4 Z92545.1-201ENST00000411782 234 ntBASIC3□□□□□ -1.93
LHX3Q9UBR4 AL008987.1-201ENST00000415528 237 ntBASIC3□□□□□ -1.93
LHX3Q9UBR4 MTCO2P21-201ENST00000419780 677 ntBASIC3□□□□□ -1.93
LHX3Q9UBR4 RPS15AP6-201ENST00000420703 385 ntBASIC3□□□□□ -1.93
LHX3Q9UBR4 BX119904.4-201ENST00000424402 301 ntBASIC3□□□□□ -1.93
LHX3Q9UBR4 TXNL1P1-201ENST00000429528 554 ntBASIC3□□□□□ -1.93
LHX3Q9UBR4 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3□□□□□ -1.93
LHX3Q9UBR4 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC3□□□□□ -1.93
LHX3Q9UBR4 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC3□□□□□ -1.93
LHX3Q9UBR4 RPL26P6-201ENST00000440913 438 ntBASIC3□□□□□ -1.93
LHX3Q9UBR4 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC3□□□□□ -1.93
LHX3Q9UBR4 IGKV1OR-3-201ENST00000446944 348 ntBASIC3□□□□□ -1.93
LHX3Q9UBR4 Z73417.1-201ENST00000447373 778 ntBASIC3□□□□□ -1.93
LHX3Q9UBR4 AC140076.1-201ENST00000449897 361 ntBASIC3□□□□□ -1.93
LHX3Q9UBR4 UQCRHP3-201ENST00000451503 251 ntBASIC3□□□□□ -1.93
LHX3Q9UBR4 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC3□□□□□ -1.93
LHX3Q9UBR4 HMGN2P13-201ENST00000476476 274 ntBASIC3□□□□□ -1.93
LHX3Q9UBR4 AC021382.1-201ENST00000483523 359 ntBASIC3□□□□□ -1.93
LHX3Q9UBR4 AHI1-208ENST00000488690 712 ntTSL 5 BASIC3□□□□□ -1.93
LHX3Q9UBR4 KCTD9P5-201ENST00000504141 1170 ntBASIC3□□□□□ -1.93
LHX3Q9UBR4 AC109464.2-201ENST00000510242 943 ntBASIC3□□□□□ -1.93
LHX3Q9UBR4 AC026801.2-201ENST00000515352 425 ntBASIC3□□□□□ -1.93
LHX3Q9UBR4 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC3□□□□□ -1.93
LHX3Q9UBR4 AC245166.1-201ENST00000521012 253 ntBASIC3□□□□□ -1.93
LHX3Q9UBR4 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC3□□□□□ -1.93
LHX3Q9UBR4 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC3□□□□□ -1.93
LHX3Q9UBR4 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC3□□□□□ -1.93
LHX3Q9UBR4 AC023050.2-201ENST00000544968 387 ntBASIC3□□□□□ -1.93
LHX3Q9UBR4 AC125611.2-201ENST00000551907 647 ntBASIC3□□□□□ -1.93
LHX3Q9UBR4 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC3□□□□□ -1.93
LHX3Q9UBR4 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC3□□□□□ -1.93
LHX3Q9UBR4 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC3□□□□□ -1.93
LHX3Q9UBR4 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
LHX3Q9UBR4 MIR3186-201ENST00000577404 85 ntBASIC3□□□□□ -1.93
LHX3Q9UBR4 AC105224.1-201ENST00000587055 421 ntBASIC3□□□□□ -1.93
LHX3Q9UBR4 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC3□□□□□ -1.93
LHX3Q9UBR4 AC107952.2-201ENST00000606048 486 ntBASIC3□□□□□ -1.93
LHX3Q9UBR4 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3□□□□□ -1.93
LHX3Q9UBR4 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3□□□□□ -1.93
LHX3Q9UBR4 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC3□□□□□ -1.93
LHX3Q9UBR4 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3□□□□□ -1.93
LHX3Q9UBR4 AC005832.2-201ENST00000538921 1430 ntBASIC3□□□□□ -1.93
LHX3Q9UBR4 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3□□□□□ -1.93
LHX3Q9UBR4 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3□□□□□ -1.93
LHX3Q9UBR4 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC2.99□□□□□ -1.93
LHX3Q9UBR4 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC2.99□□□□□ -1.93
LHX3Q9UBR4 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC2.99□□□□□ -1.93
LHX3Q9UBR4 AC092447.10-201ENST00000620607 1652 ntBASIC2.99□□□□□ -1.93
LHX3Q9UBR4 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
LHX3Q9UBR4 MIR148B-201ENST00000362252 99 ntBASIC2.99□□□□□ -1.93
LHX3Q9UBR4 RNU6-1078P-201ENST00000364522 103 ntBASIC2.99□□□□□ -1.93
LHX3Q9UBR4 RNU6-76P-201ENST00000384060 104 ntBASIC2.99□□□□□ -1.93
LHX3Q9UBR4 RPS3AP26-201ENST00000398259 784 ntBASIC2.99□□□□□ -1.93
LHX3Q9UBR4 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC2.99□□□□□ -1.93
LHX3Q9UBR4 AC096664.2-201ENST00000411843 406 ntBASIC2.99□□□□□ -1.93
LHX3Q9UBR4 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC2.99□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 121.6 ms