Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 AC135507.2-201ENST00000612443 309 ntBASIC3.21□□□□□ -1.9
VPS54Q9P1Q0 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.21□□□□□ -1.9
VPS54Q9P1Q0 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.21□□□□□ -1.9
VPS54Q9P1Q0 AL390862.1-201ENST00000635467 1469 ntBASIC3.21□□□□□ -1.9
VPS54Q9P1Q0 AC103988.1-201ENST00000566382 2177 ntBASIC3.21□□□□□ -1.9
VPS54Q9P1Q0 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.21□□□□□ -1.9
VPS54Q9P1Q0 AP000776.1-201ENST00000530032 1663 ntBASIC3.2□□□□□ -1.9
VPS54Q9P1Q0 AL356473.1-201ENST00000406203 1408 ntBASIC3.2□□□□□ -1.9
VPS54Q9P1Q0 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
VPS54Q9P1Q0 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
VPS54Q9P1Q0 MIR513B-201ENST00000385136 84 ntBASIC3.2□□□□□ -1.9
VPS54Q9P1Q0 AL356131.1-201ENST00000405826 414 ntBASIC3.2□□□□□ -1.9
VPS54Q9P1Q0 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.2□□□□□ -1.9
VPS54Q9P1Q0 AL645937.1-202ENST00000421799 937 ntBASIC3.2□□□□□ -1.9
VPS54Q9P1Q0 MTCO2P5-201ENST00000422621 426 ntBASIC3.2□□□□□ -1.9
VPS54Q9P1Q0 AL139421.1-201ENST00000423010 169 ntBASIC3.2□□□□□ -1.9
VPS54Q9P1Q0 AL513043.1-201ENST00000439124 535 ntBASIC3.2□□□□□ -1.9
VPS54Q9P1Q0 BX322784.1-201ENST00000455793 1077 ntBASIC3.2□□□□□ -1.9
VPS54Q9P1Q0 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
VPS54Q9P1Q0 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC3.2□□□□□ -1.9
VPS54Q9P1Q0 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC3.2□□□□□ -1.9
VPS54Q9P1Q0 RNU6-311P-201ENST00000516224 102 ntBASIC3.2□□□□□ -1.9
VPS54Q9P1Q0 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
VPS54Q9P1Q0 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
VPS54Q9P1Q0 CYCSP2-201ENST00000558168 301 ntBASIC3.2□□□□□ -1.9
VPS54Q9P1Q0 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC3.2□□□□□ -1.9
VPS54Q9P1Q0 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC3.2□□□□□ -1.9
VPS54Q9P1Q0 AC004853.1-201ENST00000604902 698 ntBASIC3.2□□□□□ -1.9
VPS54Q9P1Q0 AC004832.5-201ENST00000608677 401 ntBASIC3.2□□□□□ -1.9
VPS54Q9P1Q0 AC068831.7-201ENST00000616954 363 ntBASIC3.2□□□□□ -1.9
VPS54Q9P1Q0 Z99129.2-201ENST00000619967 314 ntBASIC3.2□□□□□ -1.9
VPS54Q9P1Q0 AC006386.2-201ENST00000624491 75 ntBASIC3.2□□□□□ -1.9
VPS54Q9P1Q0 AC012005.1-201ENST00000624575 75 ntBASIC3.2□□□□□ -1.9
VPS54Q9P1Q0 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
VPS54Q9P1Q0 ASNSP3-201ENST00000451989 1306 ntBASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 AC108206.1-201ENST00000570186 4159 ntBASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 RNU6-28P-201ENST00000362378 107 ntBASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 RNU6-173P-201ENST00000364215 104 ntBASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 RNU1-112P-201ENST00000364401 164 ntBASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 RNU6-343P-201ENST00000364709 104 ntBASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 BMS1P22-201ENST00000414726 313 ntBASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 SSXP9-201ENST00000417503 292 ntBASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 OFD1P11Y-201ENST00000418213 1177 ntBASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 AC087499.2-201ENST00000432861 149 ntBASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 AC004866.2-201ENST00000438285 481 ntBASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 MTCYBP34-201ENST00000439552 670 ntBASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 AC107083.1-201ENST00000439643 279 ntBASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 CR769776.1-201ENST00000441254 787 ntBASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 MTND3P1-201ENST00000441336 220 ntBASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 AC025750.2-201ENST00000442609 450 ntBASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 RAC1P7-201ENST00000445367 377 ntBASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 RPL36AP33-201ENST00000450395 310 ntBASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 RPL31P50-201ENST00000471002 296 ntBASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 NAA50-206ENST00000493454 964 ntTSL 2 BASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 AC010587.2-201ENST00000511727 448 ntBASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 AC239860.2-201ENST00000525886 270 ntBASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 EIF4BP1-201ENST00000554881 351 ntBASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 AL391156.1-201ENST00000554965 554 ntBASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 AC009712.1-201ENST00000564938 316 ntBASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 AL158042.1-201ENST00000605338 460 ntBASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 AC245297.2-201ENST00000610119 565 ntBASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 AC092106.3-201ENST00000611308 722 ntBASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 AP000484.1-201ENST00000620067 1252 ntBASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
VPS54Q9P1Q0 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 AL161431.1-201ENST00000618966 4205 ntBASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 DYNLT3P1-201ENST00000378574 347 ntBASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 Y_RNA.548-201ENST00000384656 105 ntBASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 MIR135A2-201ENST00000384854 100 ntBASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 RPS3AP26-201ENST00000398259 784 ntBASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 AL136372.1-201ENST00000403060 228 ntBASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 USP9YP33-201ENST00000412220 421 ntBASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 RPS15AP38-201ENST00000413110 372 ntBASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms