Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC008127.2-201ENST00000549925 1075 ntBASIC1.41□□□□□ -2.18
VPS13AQ96RL7 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC1.41□□□□□ -2.18
VPS13AQ96RL7 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC1.41□□□□□ -2.18
VPS13AQ96RL7 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC1.41□□□□□ -2.18
VPS13AQ96RL7 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC1.41□□□□□ -2.18
VPS13AQ96RL7 Y_RNA.294-201ENST00000364916 102 ntBASIC1.41□□□□□ -2.18
VPS13AQ96RL7 AC240504.1-201ENST00000395709 845 ntBASIC1.41□□□□□ -2.18
VPS13AQ96RL7 AL096701.2-201ENST00000416920 238 ntBASIC1.41□□□□□ -2.18
VPS13AQ96RL7 AC107015.1-201ENST00000466902 747 ntBASIC1.41□□□□□ -2.18
VPS13AQ96RL7 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC1.41□□□□□ -2.18
VPS13AQ96RL7 MTND5P21-201ENST00000531961 522 ntBASIC1.41□□□□□ -2.18
VPS13AQ96RL7 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC1.41□□□□□ -2.18
VPS13AQ96RL7 AL158801.5-201ENST00000623123 465 ntBASIC1.41□□□□□ -2.18
VPS13AQ96RL7 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.4□□□□□ -2.18
VPS13AQ96RL7 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC1.4□□□□□ -2.18
VPS13AQ96RL7 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC1.4□□□□□ -2.19
VPS13AQ96RL7 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC1.4□□□□□ -2.19
VPS13AQ96RL7 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC1.4□□□□□ -2.19
VPS13AQ96RL7 RPS6P15-201ENST00000431996 751 ntBASIC1.4□□□□□ -2.19
VPS13AQ96RL7 CKS1BP5-201ENST00000434172 273 ntBASIC1.4□□□□□ -2.19
VPS13AQ96RL7 RPL34P26-201ENST00000445636 354 ntBASIC1.4□□□□□ -2.19
VPS13AQ96RL7 TPRKBP1-201ENST00000456243 481 ntBASIC1.4□□□□□ -2.19
VPS13AQ96RL7 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.19
VPS13AQ96RL7 ZNF209P-201ENST00000593450 2304 ntBASIC1.4□□□□□ -2.19
VPS13AQ96RL7 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.4□□□□□ -2.19
VPS13AQ96RL7 MIRLET7G-201ENST00000362280 84 ntBASIC1.4□□□□□ -2.19
VPS13AQ96RL7 BLOC1S2P1-201ENST00000428431 301 ntBASIC1.4□□□□□ -2.19
VPS13AQ96RL7 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC1.4□□□□□ -2.19
VPS13AQ96RL7 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC1.4□□□□□ -2.19
VPS13AQ96RL7 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC1.4□□□□□ -2.19
VPS13AQ96RL7 AC116158.1-201ENST00000560231 2129 ntBASIC1.4□□□□□ -2.19
VPS13AQ96RL7 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC1.4□□□□□ -2.19
VPS13AQ96RL7 AL121917.1-203ENST00000605534 577 ntBASIC1.4□□□□□ -2.19
VPS13AQ96RL7 AC103810.8-201ENST00000607347 118 ntBASIC1.4□□□□□ -2.19
VPS13AQ96RL7 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
VPS13AQ96RL7 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC1.39□□□□□ -2.19
VPS13AQ96RL7 SNORA70.7-201ENST00000384159 133 ntBASIC1.39□□□□□ -2.19
VPS13AQ96RL7 IFNWP4-201ENST00000453148 294 ntBASIC1.39□□□□□ -2.19
VPS13AQ96RL7 RNA5SP395-201ENST00000516567 118 ntBASIC1.39□□□□□ -2.19
VPS13AQ96RL7 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC1.39□□□□□ -2.19
VPS13AQ96RL7 MKKS-204ENST00000639674 192 ntBASIC1.39□□□□□ -2.19
VPS13AQ96RL7 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC1.39□□□□□ -2.19
VPS13AQ96RL7 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC1.39□□□□□ -2.19
VPS13AQ96RL7 RNU4-91P-201ENST00000364778 135 ntBASIC1.39□□□□□ -2.19
VPS13AQ96RL7 AC090774.1-201ENST00000435925 246 ntBASIC1.39□□□□□ -2.19
VPS13AQ96RL7 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
VPS13AQ96RL7 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
VPS13AQ96RL7 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
VPS13AQ96RL7 AC073901.1-201ENST00000462471 408 ntBASIC1.39□□□□□ -2.19
VPS13AQ96RL7 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC1.39□□□□□ -2.19
VPS13AQ96RL7 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC1.39□□□□□ -2.19
VPS13AQ96RL7 PDCD5P1-201ENST00000543528 309 ntBASIC1.39□□□□□ -2.19
VPS13AQ96RL7 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC1.39□□□□□ -2.19
VPS13AQ96RL7 AC008133.2-201ENST00000624540 351 ntBASIC1.39□□□□□ -2.19
VPS13AQ96RL7 RBBP8P1-201ENST00000449447 1844 ntBASIC1.38□□□□□ -2.19
VPS13AQ96RL7 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC1.38□□□□□ -2.19
VPS13AQ96RL7 SNRPEP2-201ENST00000397592 279 ntBASIC1.38□□□□□ -2.19
VPS13AQ96RL7 HMGN2P35-201ENST00000412164 270 ntBASIC1.38□□□□□ -2.19
VPS13AQ96RL7 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC1.38□□□□□ -2.19
VPS13AQ96RL7 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC1.38□□□□□ -2.19
VPS13AQ96RL7 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC1.38□□□□□ -2.19
VPS13AQ96RL7 RPPH1-2P-201ENST00000516688 293 ntBASIC1.38□□□□□ -2.19
VPS13AQ96RL7 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.38□□□□□ -2.19
VPS13AQ96RL7 NTS-203ENST00000551529 801 ntTSL 3 BASIC1.38□□□□□ -2.19
VPS13AQ96RL7 SLC9B1P2-201ENST00000398120 1184 ntBASIC1.38□□□□□ -2.19
VPS13AQ96RL7 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC1.38□□□□□ -2.19
VPS13AQ96RL7 RNU1-40P-201ENST00000516816 164 ntBASIC1.38□□□□□ -2.19
VPS13AQ96RL7 RNU1-97P-201ENST00000516872 164 ntBASIC1.38□□□□□ -2.19
VPS13AQ96RL7 MIR3660-201ENST00000584845 100 ntBASIC1.38□□□□□ -2.19
VPS13AQ96RL7 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC1.38□□□□□ -2.19
VPS13AQ96RL7 FO624990.1-201ENST00000636373 85 ntBASIC1.38□□□□□ -2.19
VPS13AQ96RL7 Y_RNA.303-201ENST00000364998 94 ntBASIC1.37□□□□□ -2.19
VPS13AQ96RL7 MIR193B-201ENST00000384907 83 ntBASIC1.37□□□□□ -2.19
VPS13AQ96RL7 MTCYBP45-201ENST00000435243 565 ntBASIC1.37□□□□□ -2.19
VPS13AQ96RL7 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.37□□□□□ -2.19
VPS13AQ96RL7 RGS5-217ENST00000451759 835 ntTSL 3 BASIC1.37□□□□□ -2.19
VPS13AQ96RL7 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC1.37□□□□□ -2.19
VPS13AQ96RL7 RPS29P20-201ENST00000489592 171 ntBASIC1.37□□□□□ -2.19
VPS13AQ96RL7 AC092451.2-201ENST00000538746 658 ntBASIC1.37□□□□□ -2.19
VPS13AQ96RL7 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC1.37□□□□□ -2.19
VPS13AQ96RL7 MIR3618-201ENST00000580330 88 ntBASIC1.37□□□□□ -2.19
VPS13AQ96RL7 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
VPS13AQ96RL7 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC1.37□□□□□ -2.19
VPS13AQ96RL7 RNA5SP363-201ENST00000365072 115 ntBASIC1.37□□□□□ -2.19
VPS13AQ96RL7 VTRNA1-3-201ENST00000365645 89 ntBASIC1.37□□□□□ -2.19
VPS13AQ96RL7 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
VPS13AQ96RL7 AC114973.1-201ENST00000429057 632 ntBASIC1.37□□□□□ -2.19
VPS13AQ96RL7 OR10R1P-201ENST00000441524 1141 ntBASIC1.37□□□□□ -2.19
VPS13AQ96RL7 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC1.37□□□□□ -2.19
VPS13AQ96RL7 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC1.37□□□□□ -2.19
VPS13AQ96RL7 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.37□□□□□ -2.19
VPS13AQ96RL7 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC1.37□□□□□ -2.19
VPS13AQ96RL7 AC018630.2-201ENST00000534866 2403 ntBASIC1.37□□□□□ -2.19
VPS13AQ96RL7 AC105313.1-201ENST00000509121 353 ntBASIC1.37□□□□□ -2.19
VPS13AQ96RL7 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC1.37□□□□□ -2.19
VPS13AQ96RL7 OR4K8P-201ENST00000578842 1048 ntBASIC1.37□□□□□ -2.19
VPS13AQ96RL7 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.37□□□□□ -2.19
VPS13AQ96RL7 AL596028.1-201ENST00000326971 197 ntBASIC1.36□□□□□ -2.19
VPS13AQ96RL7 AL512430.2-201ENST00000406786 339 ntBASIC1.36□□□□□ -2.19
VPS13AQ96RL7 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC1.36□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 109.1 ms