Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC3.06□□□□□ -1.92
VPS39Q96JC1 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.06□□□□□ -1.92
VPS39Q96JC1 AC108206.1-201ENST00000570186 4159 ntBASIC3.06□□□□□ -1.92
VPS39Q96JC1 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.06□□□□□ -1.92
VPS39Q96JC1 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.06□□□□□ -1.92
VPS39Q96JC1 AC026241.1-201ENST00000517873 2142 ntBASIC3.05□□□□□ -1.92
VPS39Q96JC1 MTND5P19-201ENST00000424872 1794 ntBASIC3.05□□□□□ -1.92
VPS39Q96JC1 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
VPS39Q96JC1 AC073325.2-201ENST00000339545 159 ntBASIC3.05□□□□□ -1.92
VPS39Q96JC1 RNU6-270P-201ENST00000364131 105 ntBASIC3.05□□□□□ -1.92
VPS39Q96JC1 RNU6-1035P-201ENST00000384477 107 ntBASIC3.05□□□□□ -1.92
VPS39Q96JC1 SNORD67-201ENST00000390833 111 ntBASIC3.05□□□□□ -1.92
VPS39Q96JC1 RNA5SP171-201ENST00000391071 115 ntBASIC3.05□□□□□ -1.92
VPS39Q96JC1 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
VPS39Q96JC1 DHFRP6-201ENST00000401776 268 ntBASIC3.05□□□□□ -1.92
VPS39Q96JC1 AL590084.1-201ENST00000407885 387 ntBASIC3.05□□□□□ -1.92
VPS39Q96JC1 SPA17P1-201ENST00000416656 452 ntBASIC3.05□□□□□ -1.92
VPS39Q96JC1 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC3.05□□□□□ -1.92
VPS39Q96JC1 AL158156.1-201ENST00000422509 473 ntBASIC3.05□□□□□ -1.92
VPS39Q96JC1 RPL7P37-201ENST00000425095 738 ntBASIC3.05□□□□□ -1.92
VPS39Q96JC1 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.05□□□□□ -1.92
VPS39Q96JC1 MTCYBP45-201ENST00000435243 565 ntBASIC3.05□□□□□ -1.92
VPS39Q96JC1 MTND2P20-201ENST00000440805 661 ntBASIC3.05□□□□□ -1.92
VPS39Q96JC1 FGF7P5-201ENST00000441829 291 ntBASIC3.05□□□□□ -1.92
VPS39Q96JC1 AC016696.1-201ENST00000446949 318 ntBASIC3.05□□□□□ -1.92
VPS39Q96JC1 TRGVB-201ENST00000453257 471 ntBASIC3.05□□□□□ -1.92
VPS39Q96JC1 AC091153.1-201ENST00000466297 402 ntBASIC3.05□□□□□ -1.92
VPS39Q96JC1 MTND4LP3-201ENST00000468320 276 ntBASIC3.05□□□□□ -1.92
VPS39Q96JC1 RN7SL633P-201ENST00000488974 297 ntBASIC3.05□□□□□ -1.92
VPS39Q96JC1 AC091951.3-201ENST00000504093 246 ntBASIC3.05□□□□□ -1.92
VPS39Q96JC1 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.05□□□□□ -1.92
VPS39Q96JC1 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC3.05□□□□□ -1.92
VPS39Q96JC1 RNU6-1282P-201ENST00000516735 96 ntBASIC3.05□□□□□ -1.92
VPS39Q96JC1 SNORA31.22-201ENST00000517204 135 ntBASIC3.05□□□□□ -1.92
VPS39Q96JC1 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC3.05□□□□□ -1.92
VPS39Q96JC1 MTND2P32-201ENST00000521584 1038 ntBASIC3.05□□□□□ -1.92
VPS39Q96JC1 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC3.05□□□□□ -1.92
VPS39Q96JC1 HSPE1P20-201ENST00000538133 289 ntBASIC3.05□□□□□ -1.92
VPS39Q96JC1 HIGD1AP17-201ENST00000554576 276 ntBASIC3.05□□□□□ -1.92
VPS39Q96JC1 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC3.05□□□□□ -1.92
VPS39Q96JC1 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.05□□□□□ -1.92
VPS39Q96JC1 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC3.05□□□□□ -1.92
VPS39Q96JC1 AP001429.1-201ENST00000602568 530 ntBASIC3.05□□□□□ -1.92
VPS39Q96JC1 AC013553.2-201ENST00000604244 589 ntBASIC3.05□□□□□ -1.92
VPS39Q96JC1 AC131235.4-201ENST00000609288 620 ntBASIC3.05□□□□□ -1.92
VPS39Q96JC1 AC244100.1-202ENST00000621554 382 ntBASIC3.05□□□□□ -1.92
VPS39Q96JC1 AC073308.1-201ENST00000623696 305 ntBASIC3.05□□□□□ -1.92
VPS39Q96JC1 AC018692.3-201ENST00000623929 123 ntBASIC3.05□□□□□ -1.92
VPS39Q96JC1 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.05□□□□□ -1.92
VPS39Q96JC1 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
VPS39Q96JC1 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
VPS39Q96JC1 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
VPS39Q96JC1 AL353743.1-202ENST00000431724 1695 ntBASIC3.04□□□□□ -1.92
VPS39Q96JC1 MTCO1P9-201ENST00000505577 1534 ntBASIC3.04□□□□□ -1.92
VPS39Q96JC1 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.04□□□□□ -1.92
VPS39Q96JC1 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.04□□□□□ -1.92
VPS39Q96JC1 RNU6-28P-201ENST00000362378 107 ntBASIC3.04□□□□□ -1.92
VPS39Q96JC1 RNA5SP267-201ENST00000364893 126 ntBASIC3.04□□□□□ -1.92
VPS39Q96JC1 RNU6-1180P-201ENST00000364935 107 ntBASIC3.04□□□□□ -1.92
VPS39Q96JC1 MIR34B-201ENST00000385076 84 ntBASIC3.04□□□□□ -1.92
VPS39Q96JC1 RN7SKP58-201ENST00000411010 305 ntBASIC3.04□□□□□ -1.92
VPS39Q96JC1 AC018630.2-202ENST00000422992 927 ntBASIC3.04□□□□□ -1.92
VPS39Q96JC1 AL365496.1-201ENST00000426885 215 ntBASIC3.04□□□□□ -1.92
VPS39Q96JC1 AC005300.1-201ENST00000428401 373 ntBASIC3.04□□□□□ -1.92
VPS39Q96JC1 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC3.04□□□□□ -1.92
VPS39Q96JC1 AC005326.1-201ENST00000429197 123 ntBASIC3.04□□□□□ -1.92
VPS39Q96JC1 ATP5F1P1-201ENST00000433775 569 ntBASIC3.04□□□□□ -1.92
VPS39Q96JC1 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC3.04□□□□□ -1.92
VPS39Q96JC1 AL109741.2-201ENST00000455561 343 ntBASIC3.04□□□□□ -1.92
VPS39Q96JC1 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC3.04□□□□□ -1.92
VPS39Q96JC1 RPS27P26-201ENST00000494583 239 ntBASIC3.04□□□□□ -1.92
VPS39Q96JC1 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC3.04□□□□□ -1.92
VPS39Q96JC1 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC3.04□□□□□ -1.92
VPS39Q96JC1 HSPD1P15-201ENST00000505573 1122 ntBASIC3.04□□□□□ -1.92
VPS39Q96JC1 AC118282.1-201ENST00000506408 765 ntBASIC3.04□□□□□ -1.92
VPS39Q96JC1 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC3.04□□□□□ -1.92
VPS39Q96JC1 AC021146.8-201ENST00000507455 733 ntBASIC3.04□□□□□ -1.92
VPS39Q96JC1 AC110760.3-202ENST00000515177 371 ntBASIC3.04□□□□□ -1.92
VPS39Q96JC1 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC3.04□□□□□ -1.92
VPS39Q96JC1 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC3.04□□□□□ -1.92
VPS39Q96JC1 ERP27-202ENST00000540097 993 ntTSL 2 BASIC3.04□□□□□ -1.92
VPS39Q96JC1 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC3.04□□□□□ -1.92
VPS39Q96JC1 SETP2-201ENST00000553886 926 ntBASIC3.04□□□□□ -1.92
VPS39Q96JC1 UBL5P2-201ENST00000583788 219 ntBASIC3.04□□□□□ -1.92
VPS39Q96JC1 BNIP3P11-201ENST00000603878 563 ntBASIC3.04□□□□□ -1.92
VPS39Q96JC1 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC3.04□□□□□ -1.92
VPS39Q96JC1 AC011451.2-201ENST00000604303 598 ntBASIC3.04□□□□□ -1.92
VPS39Q96JC1 AC021749.1-201ENST00000604322 607 ntBASIC3.04□□□□□ -1.92
VPS39Q96JC1 AL035413.2-201ENST00000604801 525 ntBASIC3.04□□□□□ -1.92
VPS39Q96JC1 AC069304.2-201ENST00000605154 435 ntBASIC3.04□□□□□ -1.92
VPS39Q96JC1 AC004067.1-201ENST00000608733 700 ntBASIC3.04□□□□□ -1.92
VPS39Q96JC1 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.04□□□□□ -1.92
VPS39Q96JC1 AL590099.1-201ENST00000615276 138 ntBASIC3.04□□□□□ -1.92
VPS39Q96JC1 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.04□□□□□ -1.92
VPS39Q96JC1 AP001002.2-201ENST00000625137 386 ntBASIC3.04□□□□□ -1.92
VPS39Q96JC1 GMFB-210ENST00000628554 639 ntTSL 4 BASIC3.04□□□□□ -1.92
VPS39Q96JC1 AC116618.1-201ENST00000634617 774 ntBASIC3.04□□□□□ -1.92
VPS39Q96JC1 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC3.04□□□□□ -1.92
VPS39Q96JC1 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC3.04□□□□□ -1.92
VPS39Q96JC1 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 135.8 ms