Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2.22□□□□□ -2.05
USP54Q70EL1 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.22□□□□□ -2.05
USP54Q70EL1 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC2.22□□□□□ -2.05
USP54Q70EL1 HMGB3P2-201ENST00000411913 584 ntBASIC2.22□□□□□ -2.05
USP54Q70EL1 AC234782.4-201ENST00000417646 1048 ntBASIC2.22□□□□□ -2.05
USP54Q70EL1 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC2.22□□□□□ -2.05
USP54Q70EL1 AC023347.2-201ENST00000433994 462 ntBASIC2.22□□□□□ -2.05
USP54Q70EL1 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC2.22□□□□□ -2.05
USP54Q70EL1 TPT1P14-201ENST00000448018 505 ntBASIC2.22□□□□□ -2.05
USP54Q70EL1 AC023424.2-201ENST00000493479 777 ntBASIC2.22□□□□□ -2.05
USP54Q70EL1 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC2.22□□□□□ -2.05
USP54Q70EL1 RNA5SP82-201ENST00000516707 92 ntBASIC2.22□□□□□ -2.05
USP54Q70EL1 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC2.22□□□□□ -2.05
USP54Q70EL1 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC2.22□□□□□ -2.05
USP54Q70EL1 MIR4474-201ENST00000579189 78 ntBASIC2.22□□□□□ -2.05
USP54Q70EL1 AC069304.3-201ENST00000603938 1084 ntBASIC2.22□□□□□ -2.05
USP54Q70EL1 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
USP54Q70EL1 AC106730.3-201ENST00000624568 641 ntBASIC2.22□□□□□ -2.05
USP54Q70EL1 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.21□□□□□ -2.05
USP54Q70EL1 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC2.21□□□□□ -2.06
USP54Q70EL1 SNORA51.2-201ENST00000364595 132 ntBASIC2.21□□□□□ -2.06
USP54Q70EL1 MIR607-201ENST00000385241 96 ntBASIC2.21□□□□□ -2.06
USP54Q70EL1 AC009237.2-201ENST00000421358 284 ntBASIC2.21□□□□□ -2.06
USP54Q70EL1 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC2.21□□□□□ -2.06
USP54Q70EL1 DPPA3P1-201ENST00000448050 469 ntBASIC2.21□□□□□ -2.06
USP54Q70EL1 RPL31P53-201ENST00000457065 348 ntBASIC2.21□□□□□ -2.06
USP54Q70EL1 RPL5P13-201ENST00000462840 709 ntBASIC2.21□□□□□ -2.06
USP54Q70EL1 AC090255.1-201ENST00000495779 349 ntBASIC2.21□□□□□ -2.06
USP54Q70EL1 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC2.21□□□□□ -2.06
USP54Q70EL1 MIR548Y-201ENST00000582739 110 ntBASIC2.21□□□□□ -2.06
USP54Q70EL1 MIR6504-201ENST00000613520 61 ntBASIC2.21□□□□□ -2.06
USP54Q70EL1 DUXAP9-208ENST00000622815 614 ntBASIC2.21□□□□□ -2.06
USP54Q70EL1 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
USP54Q70EL1 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC2.2□□□□□ -2.06
USP54Q70EL1 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
USP54Q70EL1 RNU1-109P-201ENST00000383960 147 ntBASIC2.2□□□□□ -2.06
USP54Q70EL1 XKRYP4-201ENST00000414395 483 ntBASIC2.2□□□□□ -2.06
USP54Q70EL1 HMGB1P27-201ENST00000431429 603 ntBASIC2.2□□□□□ -2.06
USP54Q70EL1 HMGN2P20-201ENST00000437531 273 ntBASIC2.2□□□□□ -2.06
USP54Q70EL1 DNAJC19P4-201ENST00000440115 345 ntBASIC2.2□□□□□ -2.06
USP54Q70EL1 RPL17P49-201ENST00000443728 411 ntBASIC2.2□□□□□ -2.06
USP54Q70EL1 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC2.2□□□□□ -2.06
USP54Q70EL1 XKRYP5-201ENST00000449659 483 ntBASIC2.2□□□□□ -2.06
USP54Q70EL1 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.2□□□□□ -2.06
USP54Q70EL1 AL137159.1-201ENST00000452808 512 ntBASIC2.2□□□□□ -2.06
USP54Q70EL1 RPL21P104-201ENST00000464143 478 ntBASIC2.2□□□□□ -2.06
USP54Q70EL1 AC090515.1-201ENST00000465295 476 ntBASIC2.2□□□□□ -2.06
USP54Q70EL1 AP001960.1-201ENST00000506494 658 ntBASIC2.2□□□□□ -2.06
USP54Q70EL1 AC113368.1-201ENST00000603736 382 ntBASIC2.2□□□□□ -2.06
USP54Q70EL1 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC2.2□□□□□ -2.06
USP54Q70EL1 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
USP54Q70EL1 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.19□□□□□ -2.06
USP54Q70EL1 AL031659.1-201ENST00000447075 539 ntBASIC2.19□□□□□ -2.06
USP54Q70EL1 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC2.19□□□□□ -2.06
USP54Q70EL1 AC245128.3-201ENST00000594721 748 ntBASIC2.19□□□□□ -2.06
USP54Q70EL1 RMST_2.1-201ENST00000617263 136 ntBASIC2.19□□□□□ -2.06
USP54Q70EL1 SNHG22-203ENST00000617833 660 ntBASIC2.19□□□□□ -2.06
USP54Q70EL1 AC098679.5-201ENST00000624394 571 ntBASIC2.19□□□□□ -2.06
USP54Q70EL1 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC2.19□□□□□ -2.06
USP54Q70EL1 HPVC1-201ENST00000629899 1198 ntBASIC2.19□□□□□ -2.06
USP54Q70EL1 PSMD5-AS1-215ENST00000640622 205 ntBASIC2.19□□□□□ -2.06
USP54Q70EL1 MTND4P23-201ENST00000447723 1363 ntBASIC2.19□□□□□ -2.06
USP54Q70EL1 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC2.19□□□□□ -2.06
USP54Q70EL1 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.18□□□□□ -2.06
USP54Q70EL1 RNU6-53P-201ENST00000365367 106 ntBASIC2.18□□□□□ -2.06
USP54Q70EL1 RNU4-74P-201ENST00000411280 161 ntBASIC2.18□□□□□ -2.06
USP54Q70EL1 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC2.18□□□□□ -2.06
USP54Q70EL1 AC069528.1-202ENST00000482888 637 ntBASIC2.18□□□□□ -2.06
USP54Q70EL1 AC113398.2-201ENST00000507630 558 ntBASIC2.18□□□□□ -2.06
USP54Q70EL1 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC2.18□□□□□ -2.06
USP54Q70EL1 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC2.18□□□□□ -2.06
USP54Q70EL1 AP005136.1-201ENST00000579765 429 ntBASIC2.18□□□□□ -2.06
USP54Q70EL1 MIR7973-1-201ENST00000614683 76 ntBASIC2.18□□□□□ -2.06
USP54Q70EL1 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
USP54Q70EL1 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.18□□□□□ -2.06
USP54Q70EL1 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
USP54Q70EL1 Y_RNA.191-201ENST00000363972 113 ntBASIC2.18□□□□□ -2.06
USP54Q70EL1 SNORA7.2-201ENST00000364446 145 ntBASIC2.18□□□□□ -2.06
USP54Q70EL1 Z98749.2-208ENST00000381646 500 ntBASIC2.18□□□□□ -2.06
USP54Q70EL1 RNU1-101P-201ENST00000391171 127 ntBASIC2.18□□□□□ -2.06
USP54Q70EL1 RPL23AP47-201ENST00000408017 460 ntBASIC2.18□□□□□ -2.06
USP54Q70EL1 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC2.18□□□□□ -2.06
USP54Q70EL1 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC2.18□□□□□ -2.06
USP54Q70EL1 SUMO1P4-201ENST00000429430 302 ntBASIC2.18□□□□□ -2.06
USP54Q70EL1 MED6P1-201ENST00000439659 713 ntBASIC2.18□□□□□ -2.06
USP54Q70EL1 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC2.18□□□□□ -2.06
USP54Q70EL1 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC2.18□□□□□ -2.06
USP54Q70EL1 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC2.18□□□□□ -2.06
USP54Q70EL1 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
USP54Q70EL1 RNA5SP480-201ENST00000516840 109 ntBASIC2.18□□□□□ -2.06
USP54Q70EL1 RN7SKP277-201ENST00000516895 283 ntBASIC2.18□□□□□ -2.06
USP54Q70EL1 IGLV3-17-201ENST00000519099 244 ntBASIC2.18□□□□□ -2.06
USP54Q70EL1 AC104115.2-201ENST00000523026 687 ntBASIC2.18□□□□□ -2.06
USP54Q70EL1 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC2.18□□□□□ -2.06
USP54Q70EL1 AL163153.1-201ENST00000554223 283 ntBASIC2.18□□□□□ -2.06
USP54Q70EL1 AC090525.3-201ENST00000605601 189 ntBASIC2.18□□□□□ -2.06
USP54Q70EL1 AC068700.1-201ENST00000565862 3754 ntBASIC2.18□□□□□ -2.06
USP54Q70EL1 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC2.17□□□□□ -2.06
USP54Q70EL1 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.17□□□□□ -2.06
USP54Q70EL1 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 107.3 ms