Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 AIG1P1-201ENST00000503376 148 ntBASIC1.32□□□□□ -2.2
CSPG4Q6UVK1 SNORA31.26-201ENST00000517250 137 ntBASIC1.32□□□□□ -2.2
CSPG4Q6UVK1 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.32□□□□□ -2.2
CSPG4Q6UVK1 AL049779.4-201ENST00000604500 156 ntBASIC1.32□□□□□ -2.2
CSPG4Q6UVK1 AC004943.3-201ENST00000624116 600 ntBASIC1.32□□□□□ -2.2
CSPG4Q6UVK1 CFTRP2-201ENST00000634304 199 ntBASIC1.32□□□□□ -2.2
CSPG4Q6UVK1 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC1.32□□□□□ -2.2
CSPG4Q6UVK1 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
CSPG4Q6UVK1 UBE2L2-201ENST00000254302 429 ntBASIC1.32□□□□□ -2.2
CSPG4Q6UVK1 RNU1-101P-201ENST00000391171 127 ntBASIC1.32□□□□□ -2.2
CSPG4Q6UVK1 HMGB3P10-201ENST00000434734 572 ntBASIC1.32□□□□□ -2.2
CSPG4Q6UVK1 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC1.32□□□□□ -2.2
CSPG4Q6UVK1 GTF2IP7-202ENST00000436677 309 ntBASIC1.32□□□□□ -2.2
CSPG4Q6UVK1 HMGB3P21-201ENST00000452483 547 ntBASIC1.32□□□□□ -2.2
CSPG4Q6UVK1 ARPC3P2-201ENST00000457786 533 ntBASIC1.32□□□□□ -2.2
CSPG4Q6UVK1 AC104472.2-201ENST00000469035 601 ntBASIC1.32□□□□□ -2.2
CSPG4Q6UVK1 RPL7P5-201ENST00000471472 736 ntBASIC1.32□□□□□ -2.2
CSPG4Q6UVK1 AC079203.1-201ENST00000487972 404 ntBASIC1.32□□□□□ -2.2
CSPG4Q6UVK1 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
CSPG4Q6UVK1 AC109464.2-201ENST00000510242 943 ntBASIC1.32□□□□□ -2.2
CSPG4Q6UVK1 AL359273.1-201ENST00000510918 627 ntBASIC1.32□□□□□ -2.2
CSPG4Q6UVK1 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.32□□□□□ -2.2
CSPG4Q6UVK1 Y_RNA.675-201ENST00000516389 149 ntBASIC1.32□□□□□ -2.2
CSPG4Q6UVK1 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC1.32□□□□□ -2.2
CSPG4Q6UVK1 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
CSPG4Q6UVK1 ZNF355P-201ENST00000427301 3216 ntBASIC1.31□□□□□ -2.2
CSPG4Q6UVK1 CDC27P3-201ENST00000635418 1910 ntBASIC1.31□□□□□ -2.2
CSPG4Q6UVK1 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
CSPG4Q6UVK1 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC1.31□□□□□ -2.2
CSPG4Q6UVK1 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC1.31□□□□□ -2.2
CSPG4Q6UVK1 AC079776.3-201ENST00000450665 370 ntBASIC1.31□□□□□ -2.2
CSPG4Q6UVK1 AC087854.1-201ENST00000519706 414 ntBASIC1.31□□□□□ -2.2
CSPG4Q6UVK1 AC084757.1-201ENST00000559987 490 ntBASIC1.31□□□□□ -2.2
CSPG4Q6UVK1 MIR4716-201ENST00000579628 84 ntBASIC1.31□□□□□ -2.2
CSPG4Q6UVK1 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC1.31□□□□□ -2.2
CSPG4Q6UVK1 AC006026.1-201ENST00000444025 1803 ntBASIC1.31□□□□□ -2.2
CSPG4Q6UVK1 METTL21EP-201ENST00000298105 713 ntBASIC1.31□□□□□ -2.2
CSPG4Q6UVK1 RNU1-22P-201ENST00000363334 158 ntBASIC1.31□□□□□ -2.2
CSPG4Q6UVK1 AC092638.1-201ENST00000411966 1275 ntBASIC1.31□□□□□ -2.2
CSPG4Q6UVK1 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC1.31□□□□□ -2.2
CSPG4Q6UVK1 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC1.31□□□□□ -2.2
CSPG4Q6UVK1 HMGB1P26-201ENST00000452520 628 ntBASIC1.31□□□□□ -2.2
CSPG4Q6UVK1 RPL31P41-201ENST00000477967 372 ntBASIC1.31□□□□□ -2.2
CSPG4Q6UVK1 RPS3AP22-201ENST00000488297 769 ntBASIC1.31□□□□□ -2.2
CSPG4Q6UVK1 RPS29P20-201ENST00000489592 171 ntBASIC1.31□□□□□ -2.2
CSPG4Q6UVK1 AC021087.2-201ENST00000504656 1203 ntBASIC1.31□□□□□ -2.2
CSPG4Q6UVK1 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC1.31□□□□□ -2.2
CSPG4Q6UVK1 ZNF209P-201ENST00000593450 2304 ntBASIC1.31□□□□□ -2.2
CSPG4Q6UVK1 AC080078.3-201ENST00000605407 463 ntBASIC1.31□□□□□ -2.2
CSPG4Q6UVK1 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC1.3□□□□□ -2.2
CSPG4Q6UVK1 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
CSPG4Q6UVK1 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.3□□□□□ -2.2
CSPG4Q6UVK1 RNU1-93P-201ENST00000364704 169 ntBASIC1.3□□□□□ -2.2
CSPG4Q6UVK1 RNU6-60P-201ENST00000364792 103 ntBASIC1.3□□□□□ -2.2
CSPG4Q6UVK1 RNA5SP167-201ENST00000365461 116 ntBASIC1.3□□□□□ -2.2
CSPG4Q6UVK1 RN7SKP101-201ENST00000411376 320 ntBASIC1.3□□□□□ -2.2
CSPG4Q6UVK1 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC1.3□□□□□ -2.2
CSPG4Q6UVK1 AC005534.2-201ENST00000431047 433 ntBASIC1.3□□□□□ -2.2
CSPG4Q6UVK1 MTCO1P43-201ENST00000431831 488 ntBASIC1.3□□□□□ -2.2
CSPG4Q6UVK1 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC1.3□□□□□ -2.2
CSPG4Q6UVK1 RN7SKP49-201ENST00000516675 260 ntBASIC1.3□□□□□ -2.2
CSPG4Q6UVK1 RNU6-56P-201ENST00000516986 93 ntBASIC1.3□□□□□ -2.2
CSPG4Q6UVK1 SEPT7P9-203ENST00000604116 343 ntBASIC1.3□□□□□ -2.2
CSPG4Q6UVK1 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.3□□□□□ -2.2
CSPG4Q6UVK1 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC1.3□□□□□ -2.2
CSPG4Q6UVK1 AC007256.1-201ENST00000392253 2765 ntBASIC1.3□□□□□ -2.2
CSPG4Q6UVK1 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC1.3□□□□□ -2.2
CSPG4Q6UVK1 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC1.3□□□□□ -2.2
CSPG4Q6UVK1 RPL5P19-201ENST00000404228 893 ntBASIC1.29□□□□□ -2.2
CSPG4Q6UVK1 SEM1P1-201ENST00000506694 209 ntBASIC1.29□□□□□ -2.2
CSPG4Q6UVK1 AC098799.2-201ENST00000509466 868 ntBASIC1.29□□□□□ -2.2
CSPG4Q6UVK1 AC239860.2-201ENST00000525886 270 ntBASIC1.29□□□□□ -2.2
CSPG4Q6UVK1 GLYCAM1-201ENST00000546596 285 ntBASIC1.29□□□□□ -2.2
CSPG4Q6UVK1 AC068135.2-201ENST00000569293 1028 ntBASIC1.29□□□□□ -2.2
CSPG4Q6UVK1 RPL23AP78-201ENST00000599928 470 ntBASIC1.29□□□□□ -2.2
CSPG4Q6UVK1 AC090953.1-201ENST00000604305 1092 ntBASIC1.29□□□□□ -2.2
CSPG4Q6UVK1 RMST_6.1-201ENST00000611980 203 ntBASIC1.29□□□□□ -2.2
CSPG4Q6UVK1 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC1.29□□□□□ -2.2
CSPG4Q6UVK1 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.29□□□□□ -2.2
CSPG4Q6UVK1 RNA5SP363-201ENST00000365072 115 ntBASIC1.29□□□□□ -2.2
CSPG4Q6UVK1 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC1.29□□□□□ -2.2
CSPG4Q6UVK1 RNU6-882P-201ENST00000391025 103 ntBASIC1.29□□□□□ -2.2
CSPG4Q6UVK1 RPL23AP29-201ENST00000397284 453 ntBASIC1.29□□□□□ -2.2
CSPG4Q6UVK1 RPL19P1-201ENST00000411635 428 ntBASIC1.29□□□□□ -2.2
CSPG4Q6UVK1 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC1.29□□□□□ -2.2
CSPG4Q6UVK1 AC106901.1-201ENST00000425086 698 ntBASIC1.29□□□□□ -2.2
CSPG4Q6UVK1 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC1.29□□□□□ -2.2
CSPG4Q6UVK1 AC109583.1-201ENST00000432156 268 ntBASIC1.29□□□□□ -2.2
CSPG4Q6UVK1 CALM1P1-201ENST00000442082 433 ntBASIC1.29□□□□□ -2.2
CSPG4Q6UVK1 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC1.29□□□□□ -2.2
CSPG4Q6UVK1 AC078918.1-201ENST00000498515 228 ntBASIC1.29□□□□□ -2.2
CSPG4Q6UVK1 MTND5P4-201ENST00000514978 288 ntBASIC1.29□□□□□ -2.2
CSPG4Q6UVK1 SNORA31.11-201ENST00000516528 139 ntBASIC1.29□□□□□ -2.2
CSPG4Q6UVK1 AL161713.1-201ENST00000555538 145 ntBASIC1.29□□□□□ -2.2
CSPG4Q6UVK1 RPL23AP88-201ENST00000605759 454 ntBASIC1.29□□□□□ -2.2
CSPG4Q6UVK1 AC025016.1-201ENST00000616746 682 ntBASIC1.29□□□□□ -2.2
CSPG4Q6UVK1 CNOT6LP1-201ENST00000559681 1462 ntBASIC1.28□□□□□ -2.2
CSPG4Q6UVK1 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
CSPG4Q6UVK1 RNA5SP457-201ENST00000363657 124 ntBASIC1.28□□□□□ -2.2
CSPG4Q6UVK1 RNU4-13P-201ENST00000364019 141 ntBASIC1.28□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms