Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC1.36□□□□□ -2.19
USF3Q68DE3 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC1.36□□□□□ -2.19
USF3Q68DE3 AL138976.2-201ENST00000563989 694 ntBASIC1.36□□□□□ -2.19
USF3Q68DE3 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC1.36□□□□□ -2.19
USF3Q68DE3 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.36□□□□□ -2.19
USF3Q68DE3 BX649567.1-201ENST00000642071 1134 ntBASIC1.36□□□□□ -2.19
USF3Q68DE3 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.36□□□□□ -2.19
USF3Q68DE3 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
USF3Q68DE3 ARPC3P1-201ENST00000437218 533 ntBASIC1.36□□□□□ -2.19
USF3Q68DE3 AL136380.1-201ENST00000447970 162 ntBASIC1.36□□□□□ -2.19
USF3Q68DE3 OR7L1P-201ENST00000456181 380 ntBASIC1.36□□□□□ -2.19
USF3Q68DE3 AC108734.3-201ENST00000481241 1165 ntBASIC1.36□□□□□ -2.19
USF3Q68DE3 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC1.36□□□□□ -2.19
USF3Q68DE3 AC022790.1-201ENST00000522872 204 ntBASIC1.36□□□□□ -2.19
USF3Q68DE3 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC1.36□□□□□ -2.19
USF3Q68DE3 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC1.36□□□□□ -2.19
USF3Q68DE3 AL713998.2-201ENST00000604538 1198 ntBASIC1.36□□□□□ -2.19
USF3Q68DE3 AL512598.1-201ENST00000610158 273 ntBASIC1.36□□□□□ -2.19
USF3Q68DE3 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC1.36□□□□□ -2.19
USF3Q68DE3 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC1.36□□□□□ -2.19
USF3Q68DE3 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC1.36□□□□□ -2.19
USF3Q68DE3 AL354685.2-201ENST00000448218 1447 ntBASIC1.35□□□□□ -2.19
USF3Q68DE3 RNU4-7P-201ENST00000364758 141 ntBASIC1.35□□□□□ -2.19
USF3Q68DE3 RNU1-101P-201ENST00000391171 127 ntBASIC1.35□□□□□ -2.19
USF3Q68DE3 MCTS2P-201ENST00000394552 546 ntBASIC1.35□□□□□ -2.19
USF3Q68DE3 MORF4L1P7-201ENST00000426038 703 ntBASIC1.35□□□□□ -2.19
USF3Q68DE3 AC114973.1-201ENST00000429057 632 ntBASIC1.35□□□□□ -2.19
USF3Q68DE3 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC1.35□□□□□ -2.19
USF3Q68DE3 OR10R1P-201ENST00000441524 1141 ntBASIC1.35□□□□□ -2.19
USF3Q68DE3 AC009238.1-201ENST00000442165 424 ntBASIC1.35□□□□□ -2.19
USF3Q68DE3 AC009237.6-201ENST00000446969 424 ntBASIC1.35□□□□□ -2.19
USF3Q68DE3 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC1.35□□□□□ -2.19
USF3Q68DE3 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC1.35□□□□□ -2.19
USF3Q68DE3 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC1.35□□□□□ -2.19
USF3Q68DE3 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC1.35□□□□□ -2.19
USF3Q68DE3 Y_RNA.675-201ENST00000516389 149 ntBASIC1.35□□□□□ -2.19
USF3Q68DE3 RNA5SP102-201ENST00000516865 106 ntBASIC1.35□□□□□ -2.19
USF3Q68DE3 ANP32BP3-201ENST00000559213 706 ntBASIC1.35□□□□□ -2.19
USF3Q68DE3 AC067805.1-201ENST00000559344 470 ntBASIC1.35□□□□□ -2.19
USF3Q68DE3 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.35□□□□□ -2.19
USF3Q68DE3 AC091057.2-201ENST00000602594 792 ntBASIC1.35□□□□□ -2.19
USF3Q68DE3 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.35□□□□□ -2.19
USF3Q68DE3 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC1.35□□□□□ -2.19
USF3Q68DE3 MTND5P35-201ENST00000557537 1720 ntBASIC1.35□□□□□ -2.19
USF3Q68DE3 MTND4P34-201ENST00000572715 1371 ntBASIC1.35□□□□□ -2.19
USF3Q68DE3 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC1.35□□□□□ -2.19
USF3Q68DE3 MAPK10-266ENST00000641066 6555 ntBASIC1.35□□□□□ -2.19
USF3Q68DE3 Y_RNA.327-201ENST00000365201 102 ntBASIC1.35□□□□□ -2.19
USF3Q68DE3 RNU6-997P-201ENST00000384725 107 ntBASIC1.35□□□□□ -2.19
USF3Q68DE3 BX682237.1-201ENST00000415016 335 ntBASIC1.35□□□□□ -2.19
USF3Q68DE3 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC1.35□□□□□ -2.19
USF3Q68DE3 HSFY3P-201ENST00000444242 1191 ntBASIC1.35□□□□□ -2.19
USF3Q68DE3 AL360221.1-201ENST00000445989 335 ntBASIC1.35□□□□□ -2.19
USF3Q68DE3 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.35□□□□□ -2.19
USF3Q68DE3 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC1.35□□□□□ -2.19
USF3Q68DE3 AC090453.1-201ENST00000495560 436 ntBASIC1.35□□□□□ -2.19
USF3Q68DE3 RPL21P131-201ENST00000497298 483 ntBASIC1.35□□□□□ -2.19
USF3Q68DE3 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
USF3Q68DE3 AC093281.2-201ENST00000510153 597 ntBASIC1.35□□□□□ -2.19
USF3Q68DE3 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.35□□□□□ -2.19
USF3Q68DE3 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC1.35□□□□□ -2.19
USF3Q68DE3 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC1.35□□□□□ -2.19
USF3Q68DE3 LLPHP1-201ENST00000603571 367 ntBASIC1.35□□□□□ -2.19
USF3Q68DE3 AC019159.1-201ENST00000605094 187 ntBASIC1.35□□□□□ -2.19
USF3Q68DE3 AC121761.2-201ENST00000617300 689 ntBASIC1.35□□□□□ -2.19
USF3Q68DE3 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC1.35□□□□□ -2.19
USF3Q68DE3 AC006026.1-201ENST00000444025 1803 ntBASIC1.35□□□□□ -2.19
USF3Q68DE3 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC1.34□□□□□ -2.19
USF3Q68DE3 MIR517C-201ENST00000385103 95 ntBASIC1.34□□□□□ -2.19
USF3Q68DE3 AP000567.1-201ENST00000406413 156 ntBASIC1.34□□□□□ -2.19
USF3Q68DE3 RPS4XP11-201ENST00000446897 772 ntBASIC1.34□□□□□ -2.19
USF3Q68DE3 AC069277.2-201ENST00000454211 432 ntBASIC1.34□□□□□ -2.19
USF3Q68DE3 AC021146.7-201ENST00000509604 775 ntBASIC1.34□□□□□ -2.19
USF3Q68DE3 ATP5EP1-201ENST00000510257 156 ntBASIC1.34□□□□□ -2.19
USF3Q68DE3 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC1.34□□□□□ -2.19
USF3Q68DE3 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.34□□□□□ -2.19
USF3Q68DE3 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC1.34□□□□□ -2.19
USF3Q68DE3 AC007375.1-201ENST00000554513 578 ntBASIC1.34□□□□□ -2.19
USF3Q68DE3 AC103987.3-201ENST00000582071 292 ntBASIC1.34□□□□□ -2.19
USF3Q68DE3 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC1.34□□□□□ -2.19
USF3Q68DE3 AL589935.2-201ENST00000616471 1231 ntBASIC1.34□□□□□ -2.19
USF3Q68DE3 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC1.34□□□□□ -2.19
USF3Q68DE3 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.34□□□□□ -2.2
USF3Q68DE3 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC1.34□□□□□ -2.2
USF3Q68DE3 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC1.34□□□□□ -2.2
USF3Q68DE3 RNU6-582P-201ENST00000362989 107 ntBASIC1.34□□□□□ -2.2
USF3Q68DE3 Y_RNA.354-201ENST00000365448 111 ntBASIC1.34□□□□□ -2.2
USF3Q68DE3 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC1.34□□□□□ -2.2
USF3Q68DE3 AC013404.1-201ENST00000413068 249 ntBASIC1.34□□□□□ -2.2
USF3Q68DE3 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC1.34□□□□□ -2.2
USF3Q68DE3 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC1.34□□□□□ -2.2
USF3Q68DE3 MTCO1P43-201ENST00000431831 488 ntBASIC1.34□□□□□ -2.2
USF3Q68DE3 BNIP3P2-201ENST00000441221 577 ntBASIC1.34□□□□□ -2.2
USF3Q68DE3 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC1.34□□□□□ -2.2
USF3Q68DE3 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC1.34□□□□□ -2.2
USF3Q68DE3 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC1.34□□□□□ -2.2
USF3Q68DE3 AL157834.3-201ENST00000615543 103 ntBASIC1.34□□□□□ -2.2
USF3Q68DE3 MIR6515-201ENST00000619843 57 ntBASIC1.34□□□□□ -2.2
USF3Q68DE3 AC098679.5-201ENST00000624394 571 ntBASIC1.34□□□□□ -2.2
USF3Q68DE3 HPVC1-201ENST00000629899 1198 ntBASIC1.34□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 126.5 ms