Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC4.44□□□□□ -1.7
USP39Q53GS9 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC4.44□□□□□ -1.7
USP39Q53GS9 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC4.44□□□□□ -1.7
USP39Q53GS9 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC4.44□□□□□ -1.7
USP39Q53GS9 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC4.44□□□□□ -1.7
USP39Q53GS9 AC017100.2-201ENST00000584628 355 ntBASIC4.44□□□□□ -1.7
USP39Q53GS9 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC4.44□□□□□ -1.7
USP39Q53GS9 AC006130.2-201ENST00000586202 326 ntBASIC4.44□□□□□ -1.7
USP39Q53GS9 AC079587.1-201ENST00000603846 277 ntBASIC4.44□□□□□ -1.7
USP39Q53GS9 AC011373.1-201ENST00000607270 237 ntBASIC4.44□□□□□ -1.7
USP39Q53GS9 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.44□□□□□ -1.7
USP39Q53GS9 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC4.44□□□□□ -1.7
USP39Q53GS9 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.44□□□□□ -1.7
USP39Q53GS9 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
USP39Q53GS9 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
USP39Q53GS9 AC018529.3-201ENST00000624212 2254 ntBASIC4.44□□□□□ -1.7
USP39Q53GS9 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
USP39Q53GS9 MAPK10-286ENST00000641208 8747 ntBASIC4.43□□□□□ -1.7
USP39Q53GS9 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
USP39Q53GS9 AL158163.1-201ENST00000603915 1649 ntBASIC4.43□□□□□ -1.7
USP39Q53GS9 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC4.43□□□□□ -1.7
USP39Q53GS9 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
USP39Q53GS9 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.43□□□□□ -1.7
USP39Q53GS9 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.43□□□□□ -1.7
USP39Q53GS9 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
USP39Q53GS9 Y_RNA.31-201ENST00000362574 102 ntBASIC4.43□□□□□ -1.7
USP39Q53GS9 SNORA62.3-201ENST00000365110 153 ntBASIC4.43□□□□□ -1.7
USP39Q53GS9 RNA5SP151-201ENST00000365632 117 ntBASIC4.43□□□□□ -1.7
USP39Q53GS9 Y_RNA.445-201ENST00000384168 102 ntBASIC4.43□□□□□ -1.7
USP39Q53GS9 MIR554-201ENST00000384874 96 ntBASIC4.43□□□□□ -1.7
USP39Q53GS9 MIR568-201ENST00000385036 95 ntBASIC4.43□□□□□ -1.7
USP39Q53GS9 Y_RNA.605-201ENST00000410577 105 ntBASIC4.43□□□□□ -1.7
USP39Q53GS9 RNU4-14P-201ENST00000410858 122 ntBASIC4.43□□□□□ -1.7
USP39Q53GS9 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC4.43□□□□□ -1.7
USP39Q53GS9 AC009237.10-201ENST00000414112 510 ntBASIC4.43□□□□□ -1.7
USP39Q53GS9 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
USP39Q53GS9 BEND7P1-201ENST00000422058 457 ntBASIC4.43□□□□□ -1.7
USP39Q53GS9 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC4.43□□□□□ -1.7
USP39Q53GS9 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC4.43□□□□□ -1.7
USP39Q53GS9 COX6CP15-201ENST00000426313 211 ntBASIC4.43□□□□□ -1.7
USP39Q53GS9 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC4.43□□□□□ -1.7
USP39Q53GS9 RPS3AP52-201ENST00000435639 297 ntBASIC4.43□□□□□ -1.7
USP39Q53GS9 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC4.43□□□□□ -1.7
USP39Q53GS9 AL049734.2-201ENST00000441066 616 ntBASIC4.43□□□□□ -1.7
USP39Q53GS9 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC4.43□□□□□ -1.7
USP39Q53GS9 MTND3P16-201ENST00000452205 344 ntBASIC4.43□□□□□ -1.7
USP39Q53GS9 AC005008.1-201ENST00000456151 612 ntBASIC4.43□□□□□ -1.7
USP39Q53GS9 AL590639.1-201ENST00000456484 337 ntBASIC4.43□□□□□ -1.7
USP39Q53GS9 RPL37P3-201ENST00000456825 293 ntBASIC4.43□□□□□ -1.7
USP39Q53GS9 MTND5P22-201ENST00000458380 195 ntBASIC4.43□□□□□ -1.7
USP39Q53GS9 RNU7-152P-201ENST00000458982 64 ntBASIC4.43□□□□□ -1.7
USP39Q53GS9 AC034236.1-201ENST00000469891 373 ntBASIC4.43□□□□□ -1.7
USP39Q53GS9 AC022034.3-201ENST00000471393 478 ntBASIC4.43□□□□□ -1.7
USP39Q53GS9 RPL23AP65-201ENST00000475608 468 ntBASIC4.43□□□□□ -1.7
USP39Q53GS9 HMGB3P15-201ENST00000507326 574 ntBASIC4.43□□□□□ -1.7
USP39Q53GS9 TMEM248P1-201ENST00000510579 951 ntBASIC4.43□□□□□ -1.7
USP39Q53GS9 AC114797.1-201ENST00000514003 728 ntBASIC4.43□□□□□ -1.7
USP39Q53GS9 AC105417.1-201ENST00000514691 285 ntBASIC4.43□□□□□ -1.7
USP39Q53GS9 RN7SKP256-201ENST00000517201 314 ntBASIC4.43□□□□□ -1.7
USP39Q53GS9 AC023632.4-201ENST00000517783 191 ntBASIC4.43□□□□□ -1.7
USP39Q53GS9 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC4.43□□□□□ -1.7
USP39Q53GS9 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC4.43□□□□□ -1.7
USP39Q53GS9 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC4.43□□□□□ -1.7
USP39Q53GS9 OR5BN1P-201ENST00000532955 829 ntBASIC4.43□□□□□ -1.7
USP39Q53GS9 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC4.43□□□□□ -1.7
USP39Q53GS9 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.43□□□□□ -1.7
USP39Q53GS9 MIR4286-201ENST00000580651 93 ntBASIC4.43□□□□□ -1.7
USP39Q53GS9 RPL7P50-201ENST00000600588 727 ntBASIC4.43□□□□□ -1.7
USP39Q53GS9 BPIFA4P-203ENST00000603168 689 ntBASIC4.43□□□□□ -1.7
USP39Q53GS9 AC121334.2-201ENST00000605387 271 ntBASIC4.43□□□□□ -1.7
USP39Q53GS9 AC080078.3-201ENST00000605407 463 ntBASIC4.43□□□□□ -1.7
USP39Q53GS9 RNU6-89P-201ENST00000606519 100 ntBASIC4.43□□□□□ -1.7
USP39Q53GS9 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.43□□□□□ -1.7
USP39Q53GS9 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.43□□□□□ -1.7
USP39Q53GS9 AC007823.1-201ENST00000569932 1566 ntBASIC4.43□□□□□ -1.7
USP39Q53GS9 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
USP39Q53GS9 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.42□□□□□ -1.7
USP39Q53GS9 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
USP39Q53GS9 MTCO1P12-201ENST00000414273 1543 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.42□□□□□ -1.7
USP39Q53GS9 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4.42□□□□□ -1.7
USP39Q53GS9 AC073343.1-201ENST00000328239 651 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 RNU6-1309P-201ENST00000363305 108 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 RN7SKP44-201ENST00000363602 316 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 RNU6-996P-201ENST00000365438 107 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 RNU4-20P-201ENST00000365601 151 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 RNU6-639P-201ENST00000384074 107 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 RNU6-196P-201ENST00000384315 107 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 MIR514A2-201ENST00000385131 88 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 MIR514A3-201ENST00000385132 88 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 RNA5SP372-201ENST00000390836 115 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 ARF4P3-201ENST00000397387 509 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.42□□□□□ -1.7
USP39Q53GS9 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.42□□□□□ -1.7
USP39Q53GS9 MTCO2P27-201ENST00000420740 428 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 AL451054.2-201ENST00000420896 202 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 HSPE1P1-201ENST00000421494 318 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 AL451062.2-201ENST00000427515 271 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 RPL7P2-201ENST00000427639 268 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC4.42□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 122.9 ms