Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 Y_RNA.553-201ENST00000384670 102 ntBASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 HLFP1-201ENST00000402375 499 ntBASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 Z98941.1-201ENST00000407764 100 ntBASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 Z97055.1-201ENST00000419730 712 ntBASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 MTCO2P34-201ENST00000421994 607 ntBASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 SLC44A3-AS1-205ENST00000424505 612 ntBASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 DUTP6-201ENST00000425573 462 ntBASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 AC109583.1-201ENST00000432156 268 ntBASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 AC010655.1-201ENST00000449336 292 ntBASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 RPL38P1-201ENST00000460914 211 ntBASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 RPS3AP50-201ENST00000487064 803 ntBASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 AC110792.1-201ENST00000491826 472 ntBASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 MTND4P2-201ENST00000507767 1203 ntBASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 KLHL2P1-201ENST00000508691 521 ntBASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 AC021146.1-201ENST00000511202 716 ntBASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 RN7SKP57-201ENST00000517248 293 ntBASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 AP002453.2-201ENST00000533503 320 ntBASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 AC125611.2-201ENST00000551907 647 ntBASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 MIR3186-201ENST00000577404 85 ntBASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 UBE2L4-201ENST00000587688 464 ntBASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 SEPT7P9-203ENST00000604116 343 ntBASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 AP001330.4-201ENST00000604350 154 ntBASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 AL022099.1-201ENST00000604551 712 ntBASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 AL034351.1-201ENST00000605288 668 ntBASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 AC008250.2-201ENST00000615261 205 ntBASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 MIR6715A-201ENST00000615929 79 ntBASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 AC002550.2-201ENST00000621246 394 ntBASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 AC092628.2-201ENST00000622492 339 ntBASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 AL158801.5-201ENST00000623123 465 ntBASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
PDLIM3Q53GG5 AL390237.1-201ENST00000404226 1415 ntBASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 MIR423-201ENST00000362201 94 ntBASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 Y_RNA.46-201ENST00000362695 102 ntBASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 Y_RNA.359-201ENST00000365498 102 ntBASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 RN7SKP156-201ENST00000410308 342 ntBASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 AC078974.1-201ENST00000411597 223 ntBASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 OR1AA1P-201ENST00000419597 916 ntBASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 YPEL5P1-201ENST00000419731 367 ntBASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 RPL21P32-201ENST00000419877 477 ntBASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 AC099677.1-201ENST00000420575 175 ntBASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 BEND7P1-201ENST00000422058 457 ntBASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 SNRPEP4-201ENST00000435815 279 ntBASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 USP9YP29-201ENST00000445112 563 ntBASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 RPS11P1-201ENST00000451072 473 ntBASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 AC098824.1-201ENST00000453565 980 ntBASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 HMGN2P13-201ENST00000476476 274 ntBASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 RPL32P34-201ENST00000486380 400 ntBASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 AC008489.1-201ENST00000524271 483 ntBASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 PTS-202ENST00000524931 696 ntTSL 3 BASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 AC018630.1-201ENST00000541376 925 ntBASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 AC123904.2-201ENST00000548059 300 ntBASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 FAM60BP-201ENST00000578364 658 ntBASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 MIR3611-201ENST00000584484 83 ntBASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 AC040904.1-201ENST00000590850 223 ntBASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 AP001429.1-201ENST00000602568 530 ntBASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 AC103591.3-201ENST00000608684 209 ntBASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 AC010678.1-201ENST00000614118 713 ntBASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms