Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC40Q4G0X9 AL359273.1-201ENST00000510918 627 ntBASIC3.17□□□□□ -1.9
CCDC40Q4G0X9 AC079395.1-201ENST00000510981 262 ntBASIC3.17□□□□□ -1.9
CCDC40Q4G0X9 GMPSP1-201ENST00000514075 579 ntBASIC3.17□□□□□ -1.9
CCDC40Q4G0X9 SCGB1D5P-201ENST00000515134 247 ntBASIC3.17□□□□□ -1.9
CCDC40Q4G0X9 RNU6-528P-201ENST00000516926 100 ntBASIC3.17□□□□□ -1.9
CCDC40Q4G0X9 AP002404.1-201ENST00000532005 451 ntBASIC3.17□□□□□ -1.9
CCDC40Q4G0X9 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC3.17□□□□□ -1.9
CCDC40Q4G0X9 AC107016.2-201ENST00000547968 190 ntBASIC3.17□□□□□ -1.9
CCDC40Q4G0X9 CYCSP2-201ENST00000558168 301 ntBASIC3.17□□□□□ -1.9
CCDC40Q4G0X9 MIR3921-201ENST00000577308 85 ntBASIC3.17□□□□□ -1.9
CCDC40Q4G0X9 AC011260.1-201ENST00000578420 472 ntBASIC3.17□□□□□ -1.9
CCDC40Q4G0X9 AP001269.3-201ENST00000588718 329 ntBASIC3.17□□□□□ -1.9
CCDC40Q4G0X9 AC023043.3-201ENST00000593113 385 ntBASIC3.17□□□□□ -1.9
CCDC40Q4G0X9 DUXAP4-201ENST00000603046 613 ntBASIC3.17□□□□□ -1.9
CCDC40Q4G0X9 AL157392.4-201ENST00000609756 345 ntBASIC3.17□□□□□ -1.9
CCDC40Q4G0X9 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC40Q4G0X9 AC091953.5-201ENST00000622919 233 ntBASIC3.17□□□□□ -1.9
CCDC40Q4G0X9 AC090772.4-201ENST00000623599 362 ntBASIC3.17□□□□□ -1.9
CCDC40Q4G0X9 AC010608.3-201ENST00000625048 527 ntBASIC3.17□□□□□ -1.9
CCDC40Q4G0X9 UGP2-231ENST00000627474 264 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC40Q4G0X9 AC116618.1-201ENST00000634617 774 ntBASIC3.17□□□□□ -1.9
CCDC40Q4G0X9 ANKRD62P1-201ENST00000434304 1623 ntBASIC3.17□□□□□ -1.9
CCDC40Q4G0X9 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC3.17□□□□□ -1.9
CCDC40Q4G0X9 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
CCDC40Q4G0X9 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 AC008568.2-201ENST00000623862 2313 ntBASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 GABRG2-229ENST00000641017 3628 ntBASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 MIR422A-201ENST00000362286 90 ntBASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 Y_RNA.192-201ENST00000363977 102 ntBASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 RNA5SP387-201ENST00000364226 106 ntBASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 Y_RNA.311-201ENST00000365068 96 ntBASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 MIR181A2-201ENST00000384863 110 ntBASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 MIR512-1-201ENST00000384913 84 ntBASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 ATP5F1P1-201ENST00000433775 569 ntBASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 SNRPGP6-201ENST00000451124 220 ntBASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 snoU13.8-201ENST00000458890 104 ntBASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 AL049714.1-201ENST00000466686 347 ntBASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 SETP11-201ENST00000473027 690 ntBASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 WDR78-207ENST00000488333 613 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 AC006445.2-201ENST00000510061 472 ntBASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 MTATP6P9-201ENST00000515039 680 ntBASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 RNU6-150P-201ENST00000516237 95 ntBASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 AC125611.2-201ENST00000551907 647 ntBASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 MIR4509-3-201ENST00000578671 94 ntBASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 MIR4509-2-201ENST00000583920 94 ntBASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 AC012493.2-201ENST00000595083 291 ntBASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 AP001429.1-201ENST00000602568 530 ntBASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 BBIP1P1-201ENST00000602999 279 ntBASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 AC007179.3-201ENST00000604976 235 ntBASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 AC131902.3-201ENST00000611767 581 ntBASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 MIR4509-1-201ENST00000618224 94 ntBASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 AC109809.1-201ENST00000619665 545 ntBASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 Z99129.2-201ENST00000619967 314 ntBASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 AC002550.2-201ENST00000621246 394 ntBASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 AC012321.1-201ENST00000561622 1588 ntBASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC40Q4G0X9 AP003122.5-201ENST00000527668 3766 ntBASIC3.15□□□□□ -1.9
CCDC40Q4G0X9 AL161431.1-201ENST00000618966 4205 ntBASIC3.15□□□□□ -1.9
CCDC40Q4G0X9 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
CCDC40Q4G0X9 RNU6-76P-201ENST00000384060 104 ntBASIC3.15□□□□□ -1.91
CCDC40Q4G0X9 MIR1284-201ENST00000408337 120 ntBASIC3.15□□□□□ -1.91
CCDC40Q4G0X9 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC40Q4G0X9 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC40Q4G0X9 AC109583.1-201ENST00000432156 268 ntBASIC3.15□□□□□ -1.91
CCDC40Q4G0X9 AC090774.1-201ENST00000435925 246 ntBASIC3.15□□□□□ -1.91
CCDC40Q4G0X9 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC3.15□□□□□ -1.91
CCDC40Q4G0X9 AC002381.1-201ENST00000447049 280 ntBASIC3.15□□□□□ -1.91
CCDC40Q4G0X9 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC40Q4G0X9 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC40Q4G0X9 AC134050.1-201ENST00000495088 933 ntBASIC3.15□□□□□ -1.91
CCDC40Q4G0X9 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC40Q4G0X9 AC109445.1-201ENST00000512356 383 ntBASIC3.15□□□□□ -1.91
CCDC40Q4G0X9 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC40Q4G0X9 RNU6-714P-201ENST00000516963 103 ntBASIC3.15□□□□□ -1.91
CCDC40Q4G0X9 SNORA31.22-201ENST00000517204 135 ntBASIC3.15□□□□□ -1.91
CCDC40Q4G0X9 CASP1P1-201ENST00000526345 212 ntBASIC3.15□□□□□ -1.91
CCDC40Q4G0X9 AP000867.2-201ENST00000532468 320 ntBASIC3.15□□□□□ -1.91
CCDC40Q4G0X9 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC3.15□□□□□ -1.91
CCDC40Q4G0X9 OR6C7P-201ENST00000547875 934 ntBASIC3.15□□□□□ -1.91
CCDC40Q4G0X9 H3F3AP1-201ENST00000559984 334 ntBASIC3.15□□□□□ -1.91
CCDC40Q4G0X9 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC40Q4G0X9 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC40Q4G0X9 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 125.3 ms