Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC2.41□□□□□ -2.02
COL18A1P39060 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC2.41□□□□□ -2.02
COL18A1P39060 AC083923.1-201ENST00000523708 376 ntBASIC2.41□□□□□ -2.02
COL18A1P39060 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC2.41□□□□□ -2.02
COL18A1P39060 AC010546.1-201ENST00000569391 485 ntBASIC2.41□□□□□ -2.02
COL18A1P39060 MIR3690-201ENST00000580266 75 ntBASIC2.41□□□□□ -2.02
COL18A1P39060 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC2.41□□□□□ -2.02
COL18A1P39060 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC2.41□□□□□ -2.02
COL18A1P39060 KATNBL1P1-201ENST00000605192 748 ntBASIC2.41□□□□□ -2.02
COL18A1P39060 RNU6-156P-201ENST00000621869 107 ntBASIC2.41□□□□□ -2.02
COL18A1P39060 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.02
COL18A1P39060 AC103988.1-201ENST00000566382 2177 ntBASIC2.4□□□□□ -2.02
COL18A1P39060 SEC63P2-201ENST00000503863 1939 ntBASIC2.4□□□□□ -2.02
COL18A1P39060 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.4□□□□□ -2.03
COL18A1P39060 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC2.4□□□□□ -2.03
COL18A1P39060 MTND2P16-201ENST00000419987 799 ntBASIC2.4□□□□□ -2.03
COL18A1P39060 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC2.4□□□□□ -2.03
COL18A1P39060 AC005517.2-201ENST00000424673 553 ntBASIC2.4□□□□□ -2.03
COL18A1P39060 NEK4P1-201ENST00000433383 879 ntBASIC2.4□□□□□ -2.03
COL18A1P39060 MTCYBP31-201ENST00000438855 1122 ntBASIC2.4□□□□□ -2.03
COL18A1P39060 AC092473.1-201ENST00000441098 221 ntBASIC2.4□□□□□ -2.03
COL18A1P39060 AL035407.2-201ENST00000454090 378 ntBASIC2.4□□□□□ -2.03
COL18A1P39060 RNU7-95P-201ENST00000459222 64 ntBASIC2.4□□□□□ -2.03
COL18A1P39060 AC079804.2-201ENST00000490376 200 ntBASIC2.4□□□□□ -2.03
COL18A1P39060 AC104564.1-201ENST00000493028 407 ntBASIC2.4□□□□□ -2.03
COL18A1P39060 AC104108.1-201ENST00000509930 412 ntBASIC2.4□□□□□ -2.03
COL18A1P39060 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC2.4□□□□□ -2.03
COL18A1P39060 HMGN1P28-201ENST00000521340 364 ntBASIC2.4□□□□□ -2.03
COL18A1P39060 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC2.4□□□□□ -2.03
COL18A1P39060 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC2.4□□□□□ -2.03
COL18A1P39060 OR4T1P-201ENST00000554933 911 ntBASIC2.4□□□□□ -2.03
COL18A1P39060 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.4□□□□□ -2.03
COL18A1P39060 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC2.4□□□□□ -2.03
COL18A1P39060 SNRPGP15-201ENST00000600149 222 ntBASIC2.4□□□□□ -2.03
COL18A1P39060 AL589994.2-201ENST00000621124 579 ntBASIC2.4□□□□□ -2.03
COL18A1P39060 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC2.4□□□□□ -2.03
COL18A1P39060 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC2.4□□□□□ -2.03
COL18A1P39060 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC2.4□□□□□ -2.03
COL18A1P39060 MTND4P34-201ENST00000572715 1371 ntBASIC2.4□□□□□ -2.03
COL18A1P39060 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.4□□□□□ -2.03
COL18A1P39060 AP001486.2-201ENST00000561652 5113 ntBASIC2.39□□□□□ -2.03
COL18A1P39060 RNU6-1243P-201ENST00000364028 107 ntBASIC2.39□□□□□ -2.03
COL18A1P39060 UBE2V1P11-201ENST00000411559 285 ntBASIC2.39□□□□□ -2.03
COL18A1P39060 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC2.39□□□□□ -2.03
COL18A1P39060 HMGB3P31-201ENST00000413333 595 ntBASIC2.39□□□□□ -2.03
COL18A1P39060 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC2.39□□□□□ -2.03
COL18A1P39060 RPL23AP20-201ENST00000447965 421 ntBASIC2.39□□□□□ -2.03
COL18A1P39060 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC2.39□□□□□ -2.03
COL18A1P39060 RPS29P12-201ENST00000460178 152 ntBASIC2.39□□□□□ -2.03
COL18A1P39060 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC2.39□□□□□ -2.03
COL18A1P39060 AC133963.2-201ENST00000513686 578 ntBASIC2.39□□□□□ -2.03
COL18A1P39060 MTCO2P32-201ENST00000514865 403 ntBASIC2.39□□□□□ -2.03
COL18A1P39060 RNA5SP490-201ENST00000517141 136 ntBASIC2.39□□□□□ -2.03
COL18A1P39060 COX6CP5-201ENST00000527162 228 ntBASIC2.39□□□□□ -2.03
COL18A1P39060 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.39□□□□□ -2.03
COL18A1P39060 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC2.39□□□□□ -2.03
COL18A1P39060 YWHAQP7-201ENST00000603536 658 ntBASIC2.39□□□□□ -2.03
COL18A1P39060 AC100814.1-201ENST00000606963 623 ntBASIC2.39□□□□□ -2.03
COL18A1P39060 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC2.39□□□□□ -2.03
COL18A1P39060 AP001033.2-201ENST00000609701 1003 ntBASIC2.39□□□□□ -2.03
COL18A1P39060 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.39□□□□□ -2.03
COL18A1P39060 KPNA2P1-201ENST00000458289 1591 ntBASIC2.39□□□□□ -2.03
COL18A1P39060 EFTUD1P2-201ENST00000514817 1603 ntBASIC2.39□□□□□ -2.03
COL18A1P39060 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
COL18A1P39060 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.38□□□□□ -2.03
COL18A1P39060 RNU6-252P-201ENST00000363232 107 ntBASIC2.38□□□□□ -2.03
COL18A1P39060 LAMTOR3P1-201ENST00000428620 370 ntBASIC2.38□□□□□ -2.03
COL18A1P39060 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC2.38□□□□□ -2.03
COL18A1P39060 TRIM60P18-201ENST00000441518 828 ntBASIC2.38□□□□□ -2.03
COL18A1P39060 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC2.38□□□□□ -2.03
COL18A1P39060 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC2.38□□□□□ -2.03
COL18A1P39060 AC103833.1-201ENST00000517442 172 ntBASIC2.38□□□□□ -2.03
COL18A1P39060 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC2.38□□□□□ -2.03
COL18A1P39060 CASP1-212ENST00000531166 300 ntTSL 5 BASIC2.38□□□□□ -2.03
COL18A1P39060 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC2.38□□□□□ -2.03
COL18A1P39060 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC2.38□□□□□ -2.03
COL18A1P39060 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
COL18A1P39060 AC020895.1-201ENST00000595362 272 ntBASIC2.38□□□□□ -2.03
COL18A1P39060 HMGN2P28-201ENST00000606102 262 ntBASIC2.38□□□□□ -2.03
COL18A1P39060 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC2.38□□□□□ -2.03
COL18A1P39060 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC2.38□□□□□ -2.03
COL18A1P39060 PABPC1P7-201ENST00000413177 1513 ntBASIC2.38□□□□□ -2.03
COL18A1P39060 AC026241.1-201ENST00000517873 2142 ntBASIC2.38□□□□□ -2.03
COL18A1P39060 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
COL18A1P39060 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.38□□□□□ -2.03
COL18A1P39060 MTCO1P18-201ENST00000455518 1419 ntBASIC2.38□□□□□ -2.03
COL18A1P39060 ENSAP3-201ENST00000312710 333 ntBASIC2.38□□□□□ -2.03
COL18A1P39060 RNA5SP27-201ENST00000363839 119 ntBASIC2.38□□□□□ -2.03
COL18A1P39060 AL121972.1-201ENST00000402023 252 ntBASIC2.38□□□□□ -2.03
COL18A1P39060 MIR1276-201ENST00000408707 83 ntBASIC2.38□□□□□ -2.03
COL18A1P39060 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC2.38□□□□□ -2.03
COL18A1P39060 HMGN2P20-201ENST00000437531 273 ntBASIC2.38□□□□□ -2.03
COL18A1P39060 HIGD1AP11-201ENST00000438361 280 ntBASIC2.38□□□□□ -2.03
COL18A1P39060 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC2.38□□□□□ -2.03
COL18A1P39060 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC2.38□□□□□ -2.03
COL18A1P39060 RNU6-717P-201ENST00000459076 104 ntBASIC2.38□□□□□ -2.03
COL18A1P39060 AC109486.1-201ENST00000486833 374 ntBASIC2.38□□□□□ -2.03
COL18A1P39060 AC068781.1-201ENST00000488231 618 ntBASIC2.38□□□□□ -2.03
COL18A1P39060 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC2.38□□□□□ -2.03
COL18A1P39060 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC2.38□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 111.5 ms