Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC011352.3-201ENST00000505162 593 ntBASIC2.67□□□□□ -1.98
BRCA1P38398 PTK2-220ENST00000520151 573 ntTSL 4 BASIC2.67□□□□□ -1.98
BRCA1P38398 AC139103.1-201ENST00000534696 1030 ntBASIC2.67□□□□□ -1.98
BRCA1P38398 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC2.67□□□□□ -1.98
BRCA1P38398 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC2.67□□□□□ -1.98
BRCA1P38398 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC2.67□□□□□ -1.98
BRCA1P38398 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC2.67□□□□□ -1.98
BRCA1P38398 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC2.67□□□□□ -1.98
BRCA1P38398 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC2.67□□□□□ -1.98
BRCA1P38398 AC084824.5-201ENST00000612009 413 ntBASIC2.67□□□□□ -1.98
BRCA1P38398 AC091834.1-201ENST00000614543 472 ntBASIC2.67□□□□□ -1.98
BRCA1P38398 HPVC1-201ENST00000629899 1198 ntBASIC2.67□□□□□ -1.98
BRCA1P38398 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
BRCA1P38398 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC2.67□□□□□ -1.98
BRCA1P38398 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
BRCA1P38398 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
BRCA1P38398 RNU6-619P-201ENST00000365146 108 ntBASIC2.67□□□□□ -1.98
BRCA1P38398 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC2.67□□□□□ -1.98
BRCA1P38398 RNU6-821P-201ENST00000390995 107 ntBASIC2.67□□□□□ -1.98
BRCA1P38398 STAT4-203ENST00000409995 709 ntTSL 5 BASIC2.67□□□□□ -1.98
BRCA1P38398 BX664727.1-201ENST00000416024 466 ntBASIC2.67□□□□□ -1.98
BRCA1P38398 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC2.67□□□□□ -1.98
BRCA1P38398 AC241584.1-201ENST00000438469 1241 ntBASIC2.67□□□□□ -1.98
BRCA1P38398 snoU13.18-201ENST00000459483 104 ntBASIC2.67□□□□□ -1.98
BRCA1P38398 VPS26AP1-201ENST00000483197 979 ntBASIC2.67□□□□□ -1.98
BRCA1P38398 IGHV3-76-201ENST00000522465 295 ntBASIC2.67□□□□□ -1.98
BRCA1P38398 SYF2P1-201ENST00000550658 413 ntBASIC2.67□□□□□ -1.98
BRCA1P38398 MIR4789-201ENST00000577469 82 ntBASIC2.67□□□□□ -1.98
BRCA1P38398 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC2.67□□□□□ -1.98
BRCA1P38398 XIAPP1-201ENST00000603162 600 ntBASIC2.67□□□□□ -1.98
BRCA1P38398 AL021368.1-201ENST00000607490 540 ntBASIC2.67□□□□□ -1.98
BRCA1P38398 AL590282.1-201ENST00000610379 1136 ntBASIC2.67□□□□□ -1.98
BRCA1P38398 MIR6076-201ENST00000617521 113 ntBASIC2.67□□□□□ -1.98
BRCA1P38398 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC2.67□□□□□ -1.98
BRCA1P38398 AC006213.5-201ENST00000619673 288 ntBASIC2.67□□□□□ -1.98
BRCA1P38398 GMFB-210ENST00000628554 639 ntTSL 4 BASIC2.67□□□□□ -1.98
BRCA1P38398 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC2.67□□□□□ -1.98
BRCA1P38398 MFSD8-245ENST00000641743 948 ntBASIC2.67□□□□□ -1.98
BRCA1P38398 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
BRCA1P38398 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC2.66□□□□□ -1.98
BRCA1P38398 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC2.66□□□□□ -1.98
BRCA1P38398 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC2.66□□□□□ -1.98
BRCA1P38398 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.66□□□□□ -1.98
BRCA1P38398 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
BRCA1P38398 RNU6-1066P-201ENST00000363573 105 ntBASIC2.66□□□□□ -1.98
BRCA1P38398 Y_RNA.269-201ENST00000364685 89 ntBASIC2.66□□□□□ -1.98
BRCA1P38398 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.66□□□□□ -1.98
BRCA1P38398 FNDC3CP-201ENST00000420795 1155 ntBASIC2.66□□□□□ -1.98
BRCA1P38398 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC2.66□□□□□ -1.98
BRCA1P38398 MTND4LP10-201ENST00000435146 291 ntBASIC2.66□□□□□ -1.98
BRCA1P38398 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC2.66□□□□□ -1.98
BRCA1P38398 MUPP-201ENST00000438111 566 ntBASIC2.66□□□□□ -1.98
BRCA1P38398 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.66□□□□□ -1.98
BRCA1P38398 RPL32P14-201ENST00000463196 378 ntBASIC2.66□□□□□ -1.98
BRCA1P38398 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.66□□□□□ -1.98
BRCA1P38398 RNU6-1073P-201ENST00000517182 106 ntBASIC2.66□□□□□ -1.98
BRCA1P38398 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC2.66□□□□□ -1.98
BRCA1P38398 ARL2BPP5-201ENST00000523141 481 ntBASIC2.66□□□□□ -1.98
BRCA1P38398 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC2.66□□□□□ -1.98
BRCA1P38398 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC2.66□□□□□ -1.98
BRCA1P38398 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
BRCA1P38398 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC2.66□□□□□ -1.98
BRCA1P38398 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC2.66□□□□□ -1.98
BRCA1P38398 AC091046.2-201ENST00000620775 665 ntBASIC2.66□□□□□ -1.98
BRCA1P38398 AL160394.1-201ENST00000624765 724 ntBASIC2.66□□□□□ -1.98
BRCA1P38398 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.66□□□□□ -1.98
BRCA1P38398 DBF4P1-201ENST00000412976 1892 ntBASIC2.65□□□□□ -1.98
BRCA1P38398 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC2.65□□□□□ -1.98
BRCA1P38398 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.98
BRCA1P38398 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.98
BRCA1P38398 SNORA67.3-201ENST00000384366 140 ntBASIC2.65□□□□□ -1.98
BRCA1P38398 MIR649-201ENST00000384843 97 ntBASIC2.65□□□□□ -1.98
BRCA1P38398 MIR16-1-201ENST00000385271 89 ntBASIC2.65□□□□□ -1.98
BRCA1P38398 SNORD65C-201ENST00000390962 71 ntBASIC2.65□□□□□ -1.98
BRCA1P38398 AL513175.2-201ENST00000422071 443 ntBASIC2.65□□□□□ -1.98
BRCA1P38398 AL606495.1-201ENST00000422100 813 ntBASIC2.65□□□□□ -1.98
BRCA1P38398 AC092634.2-201ENST00000428146 1010 ntBASIC2.65□□□□□ -1.98
BRCA1P38398 COX6CP2-201ENST00000444980 225 ntBASIC2.65□□□□□ -1.98
BRCA1P38398 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC2.65□□□□□ -1.98
BRCA1P38398 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.65□□□□□ -1.98
BRCA1P38398 OR4P1P-201ENST00000530808 1136 ntBASIC2.65□□□□□ -1.98
BRCA1P38398 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC2.65□□□□□ -1.98
BRCA1P38398 MTCYBP27-201ENST00000555160 670 ntBASIC2.65□□□□□ -1.98
BRCA1P38398 AC005951.1-201ENST00000576706 485 ntBASIC2.65□□□□□ -1.98
BRCA1P38398 VN1R80P-201ENST00000597126 338 ntBASIC2.65□□□□□ -1.98
BRCA1P38398 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC2.65□□□□□ -1.98
BRCA1P38398 AC090116.1-201ENST00000615679 446 ntBASIC2.65□□□□□ -1.98
BRCA1P38398 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC2.65□□□□□ -1.98
BRCA1P38398 AL121594.5-201ENST00000631724 573 ntBASIC2.65□□□□□ -1.98
BRCA1P38398 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC2.65□□□□□ -1.98
BRCA1P38398 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC2.65□□□□□ -1.99
BRCA1P38398 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
BRCA1P38398 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC2.65□□□□□ -1.99
BRCA1P38398 FRG1BP-201ENST00000278882 761 ntBASIC2.65□□□□□ -1.99
BRCA1P38398 LUZP4P1-201ENST00000415420 344 ntBASIC2.65□□□□□ -1.99
BRCA1P38398 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.65□□□□□ -1.99
BRCA1P38398 RPL36P19-201ENST00000430744 301 ntBASIC2.65□□□□□ -1.99
BRCA1P38398 AC098826.1-201ENST00000433943 471 ntBASIC2.65□□□□□ -1.99
BRCA1P38398 HMGN2P20-201ENST00000437531 273 ntBASIC2.65□□□□□ -1.99
BRCA1P38398 RPL7P54-201ENST00000438336 674 ntBASIC2.65□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 135 ms