Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2.53□□□□□ -2
SCN4AP35499 RPL21P136-201ENST00000605378 396 ntBASIC2.53□□□□□ -2
SCN4AP35499 HSPE1P14-201ENST00000605812 302 ntBASIC2.53□□□□□ -2
SCN4AP35499 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.53□□□□□ -2
SCN4AP35499 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
SCN4AP35499 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.53□□□□□ -2
SCN4AP35499 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC2.53□□□□□ -2.01
SCN4AP35499 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.52□□□□□ -2.01
SCN4AP35499 U8.8-201ENST00000365399 135 ntBASIC2.52□□□□□ -2.01
SCN4AP35499 Y_RNA.355-201ENST00000365462 98 ntBASIC2.52□□□□□ -2.01
SCN4AP35499 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC2.52□□□□□ -2.01
SCN4AP35499 RNU6-272P-201ENST00000411028 104 ntBASIC2.52□□□□□ -2.01
SCN4AP35499 RPL19P1-201ENST00000411635 428 ntBASIC2.52□□□□□ -2.01
SCN4AP35499 ELOCP6-201ENST00000429066 328 ntBASIC2.52□□□□□ -2.01
SCN4AP35499 AC234064.1-201ENST00000436312 247 ntBASIC2.52□□□□□ -2.01
SCN4AP35499 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.52□□□□□ -2.01
SCN4AP35499 TAF9P1-201ENST00000445421 515 ntBASIC2.52□□□□□ -2.01
SCN4AP35499 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC2.52□□□□□ -2.01
SCN4AP35499 MRPL42P4-201ENST00000453267 443 ntBASIC2.52□□□□□ -2.01
SCN4AP35499 TAF9P2-201ENST00000454958 515 ntBASIC2.52□□□□□ -2.01
SCN4AP35499 NF1P3-201ENST00000457709 450 ntBASIC2.52□□□□□ -2.01
SCN4AP35499 HMGB3P30-201ENST00000457863 606 ntBASIC2.52□□□□□ -2.01
SCN4AP35499 ELOCP12-201ENST00000458706 328 ntBASIC2.52□□□□□ -2.01
SCN4AP35499 SNORD108-201ENST00000459332 71 ntBASIC2.52□□□□□ -2.01
SCN4AP35499 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
SCN4AP35499 RPL37P6-202ENST00000464216 403 ntBASIC2.52□□□□□ -2.01
SCN4AP35499 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC2.52□□□□□ -2.01
SCN4AP35499 ARL4AP2-201ENST00000507378 601 ntBASIC2.52□□□□□ -2.01
SCN4AP35499 AC048346.1-201ENST00000510247 144 ntBASIC2.52□□□□□ -2.01
SCN4AP35499 PRELID3BP4-201ENST00000515476 571 ntBASIC2.52□□□□□ -2.01
SCN4AP35499 CENPUP2-201ENST00000555897 1186 ntBASIC2.52□□□□□ -2.01
SCN4AP35499 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC2.52□□□□□ -2.01
SCN4AP35499 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC2.52□□□□□ -2.01
SCN4AP35499 RNA5SP108-201ENST00000605921 117 ntBASIC2.52□□□□□ -2.01
SCN4AP35499 AL158211.2-201ENST00000607282 395 ntBASIC2.52□□□□□ -2.01
SCN4AP35499 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.52□□□□□ -2.01
SCN4AP35499 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
SCN4AP35499 AC078880.5-201ENST00000617845 421 ntBASIC2.52□□□□□ -2.01
SCN4AP35499 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC2.52□□□□□ -2.01
SCN4AP35499 CU459211.1-201ENST00000635667 749 ntBASIC2.52□□□□□ -2.01
SCN4AP35499 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.52□□□□□ -2.01
SCN4AP35499 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.52□□□□□ -2.01
SCN4AP35499 SNORA40.4-201ENST00000390971 128 ntBASIC2.52□□□□□ -2.01
SCN4AP35499 SNORA40.18-201ENST00000391200 128 ntBASIC2.52□□□□□ -2.01
SCN4AP35499 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC2.52□□□□□ -2.01
SCN4AP35499 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC2.52□□□□□ -2.01
SCN4AP35499 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC2.52□□□□□ -2.01
SCN4AP35499 AC005517.2-201ENST00000424673 553 ntBASIC2.52□□□□□ -2.01
SCN4AP35499 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC2.52□□□□□ -2.01
SCN4AP35499 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC2.52□□□□□ -2.01
SCN4AP35499 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC2.52□□□□□ -2.01
SCN4AP35499 AC011753.1-201ENST00000451001 220 ntBASIC2.52□□□□□ -2.01
SCN4AP35499 RPL32P14-201ENST00000463196 378 ntBASIC2.52□□□□□ -2.01
SCN4AP35499 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.52□□□□□ -2.01
SCN4AP35499 AP003355.1-201ENST00000518956 587 ntBASIC2.52□□□□□ -2.01
SCN4AP35499 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.52□□□□□ -2.01
SCN4AP35499 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC2.52□□□□□ -2.01
SCN4AP35499 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC2.52□□□□□ -2.01
SCN4AP35499 AC060766.3-201ENST00000591442 263 ntBASIC2.52□□□□□ -2.01
SCN4AP35499 AC008687.2-201ENST00000597865 520 ntBASIC2.52□□□□□ -2.01
SCN4AP35499 AL049779.4-201ENST00000604500 156 ntBASIC2.52□□□□□ -2.01
SCN4AP35499 AL359821.1-201ENST00000605519 182 ntBASIC2.52□□□□□ -2.01
SCN4AP35499 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC2.52□□□□□ -2.01
SCN4AP35499 VN1R74P-201ENST00000613259 503 ntBASIC2.52□□□□□ -2.01
SCN4AP35499 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC2.52□□□□□ -2.01
SCN4AP35499 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
SCN4AP35499 AP002371.2-201ENST00000624450 503 ntBASIC2.52□□□□□ -2.01
SCN4AP35499 MIR4278-201ENST00000636094 69 ntBASIC2.52□□□□□ -2.01
SCN4AP35499 AL590396.4-201ENST00000636779 956 ntBASIC2.52□□□□□ -2.01
SCN4AP35499 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC2.52□□□□□ -2.01
SCN4AP35499 AC110774.1-201ENST00000623567 2018 ntBASIC2.51□□□□□ -2.01
SCN4AP35499 SNORA25.9-201ENST00000365087 128 ntBASIC2.51□□□□□ -2.01
SCN4AP35499 AL355615.1-201ENST00000406187 641 ntBASIC2.51□□□□□ -2.01
SCN4AP35499 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC2.51□□□□□ -2.01
SCN4AP35499 PNRC2P1-201ENST00000423940 420 ntBASIC2.51□□□□□ -2.01
SCN4AP35499 AC096632.1-201ENST00000427395 310 ntBASIC2.51□□□□□ -2.01
SCN4AP35499 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC2.51□□□□□ -2.01
SCN4AP35499 RPL23AP20-201ENST00000447965 421 ntBASIC2.51□□□□□ -2.01
SCN4AP35499 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC2.51□□□□□ -2.01
SCN4AP35499 AC108078.2-201ENST00000510750 236 ntBASIC2.51□□□□□ -2.01
SCN4AP35499 AC007687.1-201ENST00000602704 304 ntBASIC2.51□□□□□ -2.01
SCN4AP35499 AL020997.3-201ENST00000602843 359 ntBASIC2.51□□□□□ -2.01
SCN4AP35499 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.51□□□□□ -2.01
SCN4AP35499 AC097372.4-201ENST00000625025 466 ntBASIC2.51□□□□□ -2.01
SCN4AP35499 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.51□□□□□ -2.01
SCN4AP35499 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
SCN4AP35499 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
SCN4AP35499 AL139811.1-201ENST00000424779 2299 ntBASIC2.5□□□□□ -2.01
SCN4AP35499 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.5□□□□□ -2.01
SCN4AP35499 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
SCN4AP35499 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
SCN4AP35499 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
SCN4AP35499 MIR21-201ENST00000362134 72 ntBASIC2.5□□□□□ -2.01
SCN4AP35499 SNORD65C-201ENST00000390962 71 ntBASIC2.5□□□□□ -2.01
SCN4AP35499 AL354719.1-201ENST00000406535 843 ntBASIC2.5□□□□□ -2.01
SCN4AP35499 PRELID3BP11-201ENST00000414230 479 ntBASIC2.5□□□□□ -2.01
SCN4AP35499 OFD1P2Y-201ENST00000421895 1149 ntBASIC2.5□□□□□ -2.01
SCN4AP35499 AC092832.1-201ENST00000422934 400 ntBASIC2.5□□□□□ -2.01
SCN4AP35499 OR4K11P-201ENST00000431829 904 ntBASIC2.5□□□□□ -2.01
SCN4AP35499 TRIM60P18-201ENST00000441518 828 ntBASIC2.5□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 81.6 ms