Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC005517.2-201ENST00000424673 553 ntBASIC1.51□□□□□ -2.17
VCANP13611 AC004223.1-201ENST00000479840 271 ntBASIC1.51□□□□□ -2.17
VCANP13611 RNA5SP330-201ENST00000517096 96 ntBASIC1.51□□□□□ -2.17
VCANP13611 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC1.51□□□□□ -2.17
VCANP13611 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC1.51□□□□□ -2.17
VCANP13611 MIR6078-201ENST00000611069 100 ntBASIC1.51□□□□□ -2.17
VCANP13611 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
VCANP13611 AC018630.2-201ENST00000534866 2403 ntBASIC1.51□□□□□ -2.17
VCANP13611 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
VCANP13611 AC002546.1-201ENST00000588041 2504 ntBASIC1.51□□□□□ -2.17
VCANP13611 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
VCANP13611 RNA5SP331-201ENST00000364986 107 ntBASIC1.51□□□□□ -2.17
VCANP13611 HMGB3P2-201ENST00000411913 584 ntBASIC1.51□□□□□ -2.17
VCANP13611 AC027673.1-201ENST00000456245 405 ntBASIC1.51□□□□□ -2.17
VCANP13611 AP000873.1-201ENST00000463987 400 ntBASIC1.51□□□□□ -2.17
VCANP13611 RFPL1S-203ENST00000539579 330 ntBASIC1.51□□□□□ -2.17
VCANP13611 AL008729.2-201ENST00000606393 473 ntBASIC1.51□□□□□ -2.17
VCANP13611 PABPC1P9-201ENST00000426076 1612 ntBASIC1.51□□□□□ -2.17
VCANP13611 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC1.51□□□□□ -2.17
VCANP13611 METTL21EP-201ENST00000298105 713 ntBASIC1.51□□□□□ -2.17
VCANP13611 RNA5SP138-201ENST00000365098 114 ntBASIC1.51□□□□□ -2.17
VCANP13611 DYNLT3P1-201ENST00000378574 347 ntBASIC1.51□□□□□ -2.17
VCANP13611 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC1.51□□□□□ -2.17
VCANP13611 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC1.51□□□□□ -2.17
VCANP13611 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC1.51□□□□□ -2.17
VCANP13611 SNRPEP3-201ENST00000338402 276 ntBASIC1.5□□□□□ -2.17
VCANP13611 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC1.5□□□□□ -2.17
VCANP13611 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC1.5□□□□□ -2.17
VCANP13611 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC1.5□□□□□ -2.17
VCANP13611 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
VCANP13611 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC1.5□□□□□ -2.17
VCANP13611 AC084364.2-201ENST00000546924 395 ntBASIC1.5□□□□□ -2.17
VCANP13611 MKKS-204ENST00000639674 192 ntBASIC1.5□□□□□ -2.17
VCANP13611 Y_RNA.85-201ENST00000363014 111 ntBASIC1.5□□□□□ -2.17
VCANP13611 Y_RNA.167-201ENST00000363735 109 ntBASIC1.5□□□□□ -2.17
VCANP13611 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.5□□□□□ -2.17
VCANP13611 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC1.5□□□□□ -2.17
VCANP13611 FNDC3CP-201ENST00000420795 1155 ntBASIC1.5□□□□□ -2.17
VCANP13611 ARL5AP3-201ENST00000439327 386 ntBASIC1.5□□□□□ -2.17
VCANP13611 BMI1P1-201ENST00000445879 941 ntBASIC1.5□□□□□ -2.17
VCANP13611 AC108059.3-201ENST00000456388 214 ntBASIC1.5□□□□□ -2.17
VCANP13611 RPL23AP78-201ENST00000599928 470 ntBASIC1.5□□□□□ -2.17
VCANP13611 MTND5P10-201ENST00000603719 1809 ntBASIC1.5□□□□□ -2.17
VCANP13611 USP9YP33-201ENST00000412220 421 ntBASIC1.5□□□□□ -2.17
VCANP13611 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC1.5□□□□□ -2.17
VCANP13611 USP9YP35-201ENST00000435696 412 ntBASIC1.5□□□□□ -2.17
VCANP13611 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC1.5□□□□□ -2.17
VCANP13611 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC1.5□□□□□ -2.17
VCANP13611 AC097504.2-201ENST00000608088 454 ntBASIC1.5□□□□□ -2.17
VCANP13611 AL512283.1-201ENST00000606756 1384 ntBASIC1.5□□□□□ -2.17
VCANP13611 MIR3074-201ENST00000384885 81 ntBASIC1.49□□□□□ -2.17
VCANP13611 RPL26P37-201ENST00000411983 438 ntBASIC1.49□□□□□ -2.17
VCANP13611 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC1.49□□□□□ -2.17
VCANP13611 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC1.49□□□□□ -2.17
VCANP13611 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC1.49□□□□□ -2.17
VCANP13611 AC078918.1-201ENST00000498515 228 ntBASIC1.49□□□□□ -2.17
VCANP13611 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC1.49□□□□□ -2.17
VCANP13611 MIR4419B-201ENST00000577260 68 ntBASIC1.49□□□□□ -2.17
VCANP13611 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC1.49□□□□□ -2.17
VCANP13611 AC090774.1-201ENST00000435925 246 ntBASIC1.49□□□□□ -2.17
VCANP13611 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.49□□□□□ -2.17
VCANP13611 RNU6-826P-201ENST00000516827 104 ntBASIC1.49□□□□□ -2.17
VCANP13611 AL136298.1-202ENST00000556520 518 ntTSL 3 BASIC1.49□□□□□ -2.17
VCANP13611 RNA5SP354-201ENST00000391247 136 ntBASIC1.48□□□□□ -2.17
VCANP13611 SNORA26.7-201ENST00000391288 122 ntBASIC1.48□□□□□ -2.17
VCANP13611 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC1.48□□□□□ -2.17
VCANP13611 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
VCANP13611 AC008571.1-201ENST00000467232 300 ntBASIC1.48□□□□□ -2.17
VCANP13611 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC1.48□□□□□ -2.17
VCANP13611 LRRC34P2-201ENST00000514850 553 ntBASIC1.48□□□□□ -2.17
VCANP13611 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC1.48□□□□□ -2.17
VCANP13611 AC116158.1-201ENST00000560231 2129 ntBASIC1.48□□□□□ -2.17
VCANP13611 MIR338-201ENST00000636369 67 ntBASIC1.48□□□□□ -2.17
VCANP13611 AC012321.1-201ENST00000561622 1588 ntBASIC1.48□□□□□ -2.17
VCANP13611 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.48□□□□□ -2.17
VCANP13611 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC1.48□□□□□ -2.17
VCANP13611 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC1.48□□□□□ -2.17
VCANP13611 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.48□□□□□ -2.17
VCANP13611 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC1.48□□□□□ -2.17
VCANP13611 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC1.48□□□□□ -2.17
VCANP13611 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC1.48□□□□□ -2.17
VCANP13611 Y_RNA.48-201ENST00000362710 103 ntBASIC1.48□□□□□ -2.17
VCANP13611 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC1.48□□□□□ -2.17
VCANP13611 AC009965.2-201ENST00000425328 970 ntBASIC1.48□□□□□ -2.17
VCANP13611 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC1.48□□□□□ -2.17
VCANP13611 MIR3660-201ENST00000584845 100 ntBASIC1.48□□□□□ -2.17
VCANP13611 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC1.48□□□□□ -2.17
VCANP13611 MTND5P7-201ENST00000413558 1798 ntBASIC1.48□□□□□ -2.17
VCANP13611 AL358176.2-201ENST00000425769 204 ntBASIC1.47□□□□□ -2.17
VCANP13611 RGS5-217ENST00000451759 835 ntTSL 3 BASIC1.47□□□□□ -2.17
VCANP13611 SEPT7P3-201ENST00000455017 621 ntBASIC1.47□□□□□ -2.17
VCANP13611 SNRPFP3-201ENST00000457792 225 ntBASIC1.47□□□□□ -2.17
VCANP13611 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC1.47□□□□□ -2.17
VCANP13611 MIR4506-201ENST00000584693 77 ntBASIC1.47□□□□□ -2.17
VCANP13611 ABI1P1-201ENST00000603375 1120 ntBASIC1.47□□□□□ -2.17
VCANP13611 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC1.47□□□□□ -2.17
VCANP13611 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
VCANP13611 AL359851.1-201ENST00000569460 4997 ntBASIC1.47□□□□□ -2.17
VCANP13611 SNORA16.1-201ENST00000364597 132 ntBASIC1.47□□□□□ -2.17
VCANP13611 RNA5SP181-201ENST00000410246 98 ntBASIC1.47□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 143.3 ms