Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC4.8□□□□□ -1.64
COL6A1P12109 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC4.8□□□□□ -1.64
COL6A1P12109 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC4.8□□□□□ -1.64
COL6A1P12109 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC4.8□□□□□ -1.64
COL6A1P12109 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC4.8□□□□□ -1.64
COL6A1P12109 AL356432.3-201ENST00000568952 465 ntBASIC4.8□□□□□ -1.64
COL6A1P12109 AC007179.3-201ENST00000604976 235 ntBASIC4.8□□□□□ -1.64
COL6A1P12109 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
COL6A1P12109 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
COL6A1P12109 AC233309.1-201ENST00000619522 751 ntBASIC4.8□□□□□ -1.64
COL6A1P12109 AC002550.2-201ENST00000621246 394 ntBASIC4.8□□□□□ -1.64
COL6A1P12109 AC005858.4-201ENST00000623191 700 ntBASIC4.8□□□□□ -1.64
COL6A1P12109 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.8□□□□□ -1.64
COL6A1P12109 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
COL6A1P12109 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.8□□□□□ -1.64
COL6A1P12109 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL6A1P12109 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
COL6A1P12109 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL6A1P12109 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL6A1P12109 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL6A1P12109 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL6A1P12109 RNU6-28P-201ENST00000362378 107 ntBASIC4.79□□□□□ -1.64
COL6A1P12109 RNU6-169P-201ENST00000365336 107 ntBASIC4.79□□□□□ -1.64
COL6A1P12109 Y_RNA.419-201ENST00000384041 102 ntBASIC4.79□□□□□ -1.64
COL6A1P12109 RNU6-74P-201ENST00000384235 107 ntBASIC4.79□□□□□ -1.64
COL6A1P12109 Y_RNA.493-201ENST00000384422 102 ntBASIC4.79□□□□□ -1.64
COL6A1P12109 MIR483-201ENST00000385070 76 ntBASIC4.79□□□□□ -1.64
COL6A1P12109 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
COL6A1P12109 AL024474.1-201ENST00000404655 591 ntBASIC4.79□□□□□ -1.64
COL6A1P12109 TXNP7-201ENST00000406296 293 ntBASIC4.79□□□□□ -1.64
COL6A1P12109 RAB9AP3-201ENST00000412737 573 ntBASIC4.79□□□□□ -1.64
COL6A1P12109 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC4.79□□□□□ -1.64
COL6A1P12109 AC006548.1-201ENST00000427470 102 ntBASIC4.79□□□□□ -1.64
COL6A1P12109 AC137499.1-201ENST00000427602 88 ntBASIC4.79□□□□□ -1.64
COL6A1P12109 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC4.79□□□□□ -1.64
COL6A1P12109 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC4.79□□□□□ -1.64
COL6A1P12109 RAB9AP1-201ENST00000449393 573 ntBASIC4.79□□□□□ -1.64
COL6A1P12109 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC4.79□□□□□ -1.64
COL6A1P12109 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC4.79□□□□□ -1.64
COL6A1P12109 AC005921.1-201ENST00000510589 286 ntBASIC4.79□□□□□ -1.64
COL6A1P12109 RNU6-1045P-201ENST00000516321 107 ntBASIC4.79□□□□□ -1.64
COL6A1P12109 RNA5SP73-201ENST00000516744 108 ntBASIC4.79□□□□□ -1.64
COL6A1P12109 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.79□□□□□ -1.64
COL6A1P12109 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC4.79□□□□□ -1.64
COL6A1P12109 AC022616.3-201ENST00000523940 148 ntBASIC4.79□□□□□ -1.64
COL6A1P12109 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC4.79□□□□□ -1.64
COL6A1P12109 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC4.79□□□□□ -1.64
COL6A1P12109 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC4.79□□□□□ -1.64
COL6A1P12109 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC4.79□□□□□ -1.64
COL6A1P12109 AL365204.3-201ENST00000612448 685 ntBASIC4.79□□□□□ -1.64
COL6A1P12109 AL121772.2-201ENST00000614331 297 ntBASIC4.79□□□□□ -1.64
COL6A1P12109 AC009248.2-201ENST00000619826 254 ntBASIC4.79□□□□□ -1.64
COL6A1P12109 CR381572.1-201ENST00000625098 102 ntBASIC4.79□□□□□ -1.64
COL6A1P12109 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC4.79□□□□□ -1.64
COL6A1P12109 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
COL6A1P12109 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.79□□□□□ -1.64
COL6A1P12109 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL6A1P12109 MAPK10-320ENST00000641462 6696 ntBASIC4.78□□□□□ -1.64
COL6A1P12109 AC139769.1-204ENST00000472297 1931 ntBASIC4.78□□□□□ -1.64
COL6A1P12109 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL6A1P12109 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL6A1P12109 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC4.78□□□□□ -1.64
COL6A1P12109 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
COL6A1P12109 AC007685.1-201ENST00000329806 452 ntBASIC4.78□□□□□ -1.64
COL6A1P12109 RNU4-1-201ENST00000363925 141 ntBASIC4.78□□□□□ -1.64
COL6A1P12109 MIR921-201ENST00000401133 56 ntBASIC4.78□□□□□ -1.64
COL6A1P12109 AL353678.1-201ENST00000422735 741 ntBASIC4.78□□□□□ -1.64
COL6A1P12109 AL353729.1-201ENST00000425044 720 ntBASIC4.78□□□□□ -1.64
COL6A1P12109 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC4.78□□□□□ -1.64
COL6A1P12109 LAMTOR3P1-201ENST00000428620 370 ntBASIC4.78□□□□□ -1.64
COL6A1P12109 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC4.78□□□□□ -1.64
COL6A1P12109 AL049734.2-201ENST00000441066 616 ntBASIC4.78□□□□□ -1.64
COL6A1P12109 MTCYBP6-201ENST00000441810 138 ntBASIC4.78□□□□□ -1.64
COL6A1P12109 HMGB1P15-201ENST00000453854 435 ntBASIC4.78□□□□□ -1.64
COL6A1P12109 RPL7P49-201ENST00000471402 708 ntBASIC4.78□□□□□ -1.64
COL6A1P12109 RPS3AP50-201ENST00000487064 803 ntBASIC4.78□□□□□ -1.64
COL6A1P12109 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
COL6A1P12109 AC078918.1-201ENST00000498515 228 ntBASIC4.78□□□□□ -1.64
COL6A1P12109 RPL38P4-201ENST00000502376 214 ntBASIC4.78□□□□□ -1.64
COL6A1P12109 AC103851.1-201ENST00000506833 274 ntBASIC4.78□□□□□ -1.64
COL6A1P12109 HMGB3P16-201ENST00000508037 287 ntBASIC4.78□□□□□ -1.64
COL6A1P12109 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC4.78□□□□□ -1.64
COL6A1P12109 RNU6-410P-201ENST00000517006 107 ntBASIC4.78□□□□□ -1.64
COL6A1P12109 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC4.78□□□□□ -1.64
COL6A1P12109 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.78□□□□□ -1.64
COL6A1P12109 AP000907.2-201ENST00000530827 353 ntBASIC4.78□□□□□ -1.64
COL6A1P12109 OR5B19P-201ENST00000531766 928 ntBASIC4.78□□□□□ -1.64
COL6A1P12109 AC091178.1-203ENST00000584586 279 ntBASIC4.78□□□□□ -1.64
COL6A1P12109 AC010525.2-201ENST00000590920 195 ntBASIC4.78□□□□□ -1.64
COL6A1P12109 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC4.78□□□□□ -1.64
COL6A1P12109 AC004853.1-201ENST00000604902 698 ntBASIC4.78□□□□□ -1.64
COL6A1P12109 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC4.78□□□□□ -1.64
COL6A1P12109 AL356585.4-201ENST00000623078 1229 ntBASIC4.78□□□□□ -1.64
COL6A1P12109 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC4.78□□□□□ -1.64
COL6A1P12109 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC4.78□□□□□ -1.64
COL6A1P12109 AC015813.6-201ENST00000624409 5808 ntBASIC4.78□□□□□ -1.64
COL6A1P12109 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL6A1P12109 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.78□□□□□ -1.64
COL6A1P12109 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL6A1P12109 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms