Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXC11O43248 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXC11O43248 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXC11O43248 Z83846.1-201ENST00000446798 265 ntBASIC3.81□□□□□ -1.8
HOXC11O43248 AC073387.1-201ENST00000453261 709 ntBASIC3.81□□□□□ -1.8
HOXC11O43248 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC3.81□□□□□ -1.8
HOXC11O43248 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC3.81□□□□□ -1.8
HOXC11O43248 RN7SL330P-201ENST00000469709 307 ntBASIC3.81□□□□□ -1.8
HOXC11O43248 RPL7P49-201ENST00000471402 708 ntBASIC3.81□□□□□ -1.8
HOXC11O43248 RPL31P60-201ENST00000478450 367 ntBASIC3.81□□□□□ -1.8
HOXC11O43248 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXC11O43248 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXC11O43248 FABP5P5-201ENST00000515537 406 ntBASIC3.81□□□□□ -1.8
HOXC11O43248 RANP9-201ENST00000519957 271 ntBASIC3.81□□□□□ -1.8
HOXC11O43248 AC022616.6-201ENST00000520479 119 ntBASIC3.81□□□□□ -1.8
HOXC11O43248 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.81□□□□□ -1.8
HOXC11O43248 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXC11O43248 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXC11O43248 AL355836.1-201ENST00000555951 870 ntBASIC3.81□□□□□ -1.8
HOXC11O43248 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXC11O43248 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXC11O43248 MIR5047-201ENST00000579212 100 ntBASIC3.81□□□□□ -1.8
HOXC11O43248 AL031985.2-201ENST00000600955 480 ntBASIC3.81□□□□□ -1.8
HOXC11O43248 AC010620.1-201ENST00000601088 1102 ntBASIC3.81□□□□□ -1.8
HOXC11O43248 AP000254.1-201ENST00000609934 520 ntBASIC3.81□□□□□ -1.8
HOXC11O43248 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC3.81□□□□□ -1.8
HOXC11O43248 AL390240.1-201ENST00000612950 384 ntBASIC3.81□□□□□ -1.8
HOXC11O43248 AC009878.1-201ENST00000621819 340 ntBASIC3.81□□□□□ -1.8
HOXC11O43248 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
HOXC11O43248 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
HOXC11O43248 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXC11O43248 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.8□□□□□ -1.8
HOXC11O43248 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
HOXC11O43248 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
HOXC11O43248 Y_RNA.598-201ENST00000410480 95 ntBASIC3.8□□□□□ -1.8
HOXC11O43248 Y_RNA.608-201ENST00000410647 95 ntBASIC3.8□□□□□ -1.8
HOXC11O43248 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC3.8□□□□□ -1.8
HOXC11O43248 AC006366.1-201ENST00000422002 759 ntBASIC3.8□□□□□ -1.8
HOXC11O43248 TMEM167AP1-201ENST00000423409 219 ntBASIC3.8□□□□□ -1.8
HOXC11O43248 CYCSP4-201ENST00000429682 331 ntBASIC3.8□□□□□ -1.8
HOXC11O43248 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXC11O43248 MTCO3P45-201ENST00000443036 613 ntBASIC3.8□□□□□ -1.8
HOXC11O43248 MTND2P4-201ENST00000445034 1004 ntBASIC3.8□□□□□ -1.8
HOXC11O43248 PRSS3P4-201ENST00000453323 162 ntBASIC3.8□□□□□ -1.8
HOXC11O43248 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXC11O43248 AC008481.1-201ENST00000463278 396 ntBASIC3.8□□□□□ -1.8
HOXC11O43248 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
HOXC11O43248 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.8□□□□□ -1.8
HOXC11O43248 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
HOXC11O43248 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXC11O43248 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC3.8□□□□□ -1.8
HOXC11O43248 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC3.8□□□□□ -1.8
HOXC11O43248 RNU6-390P-201ENST00000516259 103 ntBASIC3.8□□□□□ -1.8
HOXC11O43248 DEFB108A-201ENST00000530110 222 ntBASIC3.8□□□□□ -1.8
HOXC11O43248 AC022878.1-201ENST00000530684 149 ntBASIC3.8□□□□□ -1.8
HOXC11O43248 AC123904.2-201ENST00000548059 300 ntBASIC3.8□□□□□ -1.8
HOXC11O43248 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXC11O43248 ARL1-211ENST00000551828 776 ntTSL 5 BASIC3.8□□□□□ -1.8
HOXC11O43248 AC006960.3-201ENST00000561845 705 ntBASIC3.8□□□□□ -1.8
HOXC11O43248 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXC11O43248 ZNF415P1-201ENST00000582279 1166 ntBASIC3.8□□□□□ -1.8
HOXC11O43248 MIR548AB-201ENST00000584917 84 ntBASIC3.8□□□□□ -1.8
HOXC11O43248 MIR3922-201ENST00000585192 84 ntBASIC3.8□□□□□ -1.8
HOXC11O43248 KC877982.1-201ENST00000602313 470 ntBASIC3.8□□□□□ -1.8
HOXC11O43248 AC112191.3-201ENST00000604371 277 ntBASIC3.8□□□□□ -1.8
HOXC11O43248 MESTIT1_2.1-201ENST00000616328 235 ntBASIC3.8□□□□□ -1.8
HOXC11O43248 U6.105-201ENST00000637379 88 ntBASIC3.8□□□□□ -1.8
HOXC11O43248 AP000553.6-201ENST00000641242 118 ntBASIC3.8□□□□□ -1.8
HOXC11O43248 AC119674.1-207ENST00000641355 633 ntBASIC3.8□□□□□ -1.8
HOXC11O43248 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXC11O43248 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
HOXC11O43248 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXC11O43248 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC3.79□□□□□ -1.8
HOXC11O43248 CUL1P1-201ENST00000509510 2425 ntBASIC3.79□□□□□ -1.8
HOXC11O43248 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXC11O43248 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXC11O43248 U3.4-201ENST00000363352 213 ntBASIC3.79□□□□□ -1.8
HOXC11O43248 RNA5SP387-201ENST00000364226 106 ntBASIC3.79□□□□□ -1.8
HOXC11O43248 AC110754.1-201ENST00000399740 601 ntBASIC3.79□□□□□ -1.8
HOXC11O43248 MRPL42P2-201ENST00000403169 426 ntBASIC3.79□□□□□ -1.8
HOXC11O43248 FAT1P1-201ENST00000406588 507 ntBASIC3.79□□□□□ -1.8
HOXC11O43248 RNU2-62P-201ENST00000410868 191 ntBASIC3.79□□□□□ -1.8
HOXC11O43248 RPL21P24-201ENST00000413752 448 ntBASIC3.79□□□□□ -1.8
HOXC11O43248 AC068533.1-201ENST00000418542 415 ntBASIC3.79□□□□□ -1.8
HOXC11O43248 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.79□□□□□ -1.8
HOXC11O43248 UBE2D3P2-201ENST00000424409 445 ntBASIC3.79□□□□□ -1.8
HOXC11O43248 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC3.79□□□□□ -1.8
HOXC11O43248 SNRPEP4-201ENST00000435815 279 ntBASIC3.79□□□□□ -1.8
HOXC11O43248 TIMM9P1-201ENST00000436122 256 ntBASIC3.79□□□□□ -1.8
HOXC11O43248 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.79□□□□□ -1.8
HOXC11O43248 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC3.79□□□□□ -1.8
HOXC11O43248 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC3.79□□□□□ -1.8
HOXC11O43248 RPL21P23-201ENST00000446654 460 ntBASIC3.79□□□□□ -1.8
HOXC11O43248 PRDX3P3-201ENST00000447765 522 ntBASIC3.79□□□□□ -1.8
HOXC11O43248 RPS27AP1-201ENST00000475545 471 ntBASIC3.79□□□□□ -1.8
HOXC11O43248 AC020893.1-201ENST00000502452 580 ntBASIC3.79□□□□□ -1.8
HOXC11O43248 CDC42P4-201ENST00000510507 563 ntBASIC3.79□□□□□ -1.8
HOXC11O43248 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC3.79□□□□□ -1.8
HOXC11O43248 RNU6-1231P-201ENST00000517185 103 ntBASIC3.79□□□□□ -1.8
HOXC11O43248 AC022690.1-201ENST00000526681 550 ntBASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 82 ms