Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 AC004486.1-201ENST00000546846 233 ntBASIC1.3□□□□□ -2.2
COL6A5A8TX70 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC1.3□□□□□ -2.2
COL6A5A8TX70 AC024560.3-201ENST00000608482 349 ntBASIC1.3□□□□□ -2.2
COL6A5A8TX70 AL589743.1-201ENST00000551932 2712 ntBASIC1.29□□□□□ -2.2
COL6A5A8TX70 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC1.29□□□□□ -2.2
COL6A5A8TX70 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC1.29□□□□□ -2.2
COL6A5A8TX70 CD3D-202ENST00000392884 476 ntTSL 2 BASIC1.29□□□□□ -2.2
COL6A5A8TX70 RNA5SP344-201ENST00000411081 104 ntBASIC1.29□□□□□ -2.2
COL6A5A8TX70 TOMM22P1-201ENST00000418578 312 ntBASIC1.29□□□□□ -2.2
COL6A5A8TX70 MTND2P9-201ENST00000422293 931 ntBASIC1.29□□□□□ -2.2
COL6A5A8TX70 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC1.29□□□□□ -2.2
COL6A5A8TX70 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC1.29□□□□□ -2.2
COL6A5A8TX70 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC1.29□□□□□ -2.2
COL6A5A8TX70 AP000787.2-201ENST00000604432 568 ntBASIC1.29□□□□□ -2.2
COL6A5A8TX70 RMST_6.1-201ENST00000611980 203 ntBASIC1.29□□□□□ -2.2
COL6A5A8TX70 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
COL6A5A8TX70 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC1.29□□□□□ -2.2
COL6A5A8TX70 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC1.29□□□□□ -2.2
COL6A5A8TX70 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC1.29□□□□□ -2.2
COL6A5A8TX70 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.29□□□□□ -2.2
COL6A5A8TX70 EIF1AXP1-201ENST00000419267 435 ntBASIC1.29□□□□□ -2.2
COL6A5A8TX70 HIGD1AP11-201ENST00000438361 280 ntBASIC1.29□□□□□ -2.2
COL6A5A8TX70 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC1.29□□□□□ -2.2
COL6A5A8TX70 AC021146.7-201ENST00000509604 775 ntBASIC1.29□□□□□ -2.2
COL6A5A8TX70 AC109464.2-201ENST00000510242 943 ntBASIC1.29□□□□□ -2.2
COL6A5A8TX70 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC1.29□□□□□ -2.2
COL6A5A8TX70 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC1.29□□□□□ -2.2
COL6A5A8TX70 AC013244.3-201ENST00000605614 388 ntBASIC1.29□□□□□ -2.2
COL6A5A8TX70 AC013562.2-201ENST00000611632 603 ntBASIC1.29□□□□□ -2.2
COL6A5A8TX70 AC025016.1-201ENST00000616746 682 ntBASIC1.29□□□□□ -2.2
COL6A5A8TX70 AC010297.1-201ENST00000623948 149 ntBASIC1.29□□□□□ -2.2
COL6A5A8TX70 AC091895.1-201ENST00000624494 256 ntBASIC1.29□□□□□ -2.2
COL6A5A8TX70 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
COL6A5A8TX70 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.28□□□□□ -2.2
COL6A5A8TX70 RNU1-22P-201ENST00000363334 158 ntBASIC1.28□□□□□ -2.2
COL6A5A8TX70 MIR520E-201ENST00000384867 87 ntBASIC1.28□□□□□ -2.2
COL6A5A8TX70 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC1.28□□□□□ -2.2
COL6A5A8TX70 AC004854.1-201ENST00000440356 349 ntBASIC1.28□□□□□ -2.2
COL6A5A8TX70 LAMTOR5P1-201ENST00000444290 270 ntBASIC1.28□□□□□ -2.2
COL6A5A8TX70 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC1.28□□□□□ -2.2
COL6A5A8TX70 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC1.28□□□□□ -2.2
COL6A5A8TX70 AC109486.1-201ENST00000486833 374 ntBASIC1.28□□□□□ -2.2
COL6A5A8TX70 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC1.28□□□□□ -2.2
COL6A5A8TX70 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC1.28□□□□□ -2.2
COL6A5A8TX70 AC090751.1-201ENST00000566966 267 ntBASIC1.28□□□□□ -2.2
COL6A5A8TX70 MKKS-204ENST00000639674 192 ntBASIC1.28□□□□□ -2.2
COL6A5A8TX70 RNA5SP181-201ENST00000410246 98 ntBASIC1.28□□□□□ -2.2
COL6A5A8TX70 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC1.28□□□□□ -2.2
COL6A5A8TX70 AC018630.2-202ENST00000422992 927 ntBASIC1.28□□□□□ -2.2
COL6A5A8TX70 EZH2P1-201ENST00000431167 291 ntBASIC1.28□□□□□ -2.2
COL6A5A8TX70 AL445305.1-201ENST00000432577 575 ntBASIC1.28□□□□□ -2.2
COL6A5A8TX70 AC092754.2-201ENST00000463506 460 ntBASIC1.28□□□□□ -2.2
COL6A5A8TX70 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.28□□□□□ -2.2
COL6A5A8TX70 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC1.28□□□□□ -2.2
COL6A5A8TX70 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC1.28□□□□□ -2.2
COL6A5A8TX70 MTATP6P3-201ENST00000581686 676 ntBASIC1.28□□□□□ -2.2
COL6A5A8TX70 AL590095.2-201ENST00000604136 117 ntBASIC1.28□□□□□ -2.2
COL6A5A8TX70 AC012150.2-201ENST00000621300 544 ntBASIC1.28□□□□□ -2.2
COL6A5A8TX70 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC1.28□□□□□ -2.2
COL6A5A8TX70 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC1.28□□□□□ -2.21
COL6A5A8TX70 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC1.28□□□□□ -2.21
COL6A5A8TX70 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
COL6A5A8TX70 RPS6P15-201ENST00000431996 751 ntBASIC1.27□□□□□ -2.21
COL6A5A8TX70 USP9YP15-201ENST00000442391 422 ntBASIC1.27□□□□□ -2.21
COL6A5A8TX70 RPL30P6-201ENST00000475925 342 ntBASIC1.27□□□□□ -2.21
COL6A5A8TX70 AC098799.2-201ENST00000509466 868 ntBASIC1.27□□□□□ -2.21
COL6A5A8TX70 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC1.27□□□□□ -2.21
COL6A5A8TX70 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC1.27□□□□□ -2.21
COL6A5A8TX70 RPS3AP23-202ENST00000574601 686 ntBASIC1.27□□□□□ -2.21
COL6A5A8TX70 MIR3670-2-201ENST00000582974 65 ntBASIC1.27□□□□□ -2.21
COL6A5A8TX70 MIR3670-1-201ENST00000584160 65 ntBASIC1.27□□□□□ -2.21
COL6A5A8TX70 MIR3670-3-201ENST00000584855 65 ntBASIC1.27□□□□□ -2.21
COL6A5A8TX70 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC1.27□□□□□ -2.21
COL6A5A8TX70 MIR3670-4-201ENST00000612260 65 ntBASIC1.27□□□□□ -2.21
COL6A5A8TX70 Xist_exon1.1-201ENST00000618930 85 ntBASIC1.27□□□□□ -2.21
COL6A5A8TX70 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.27□□□□□ -2.21
COL6A5A8TX70 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.27□□□□□ -2.21
COL6A5A8TX70 ZNF271P-202ENST00000465539 1970 ntBASIC1.27□□□□□ -2.21
COL6A5A8TX70 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
COL6A5A8TX70 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC1.27□□□□□ -2.21
COL6A5A8TX70 Y_RNA.132-201ENST00000363421 102 ntBASIC1.27□□□□□ -2.21
COL6A5A8TX70 RNY3-201ENST00000365484 102 ntBASIC1.27□□□□□ -2.21
COL6A5A8TX70 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC1.27□□□□□ -2.21
COL6A5A8TX70 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC1.27□□□□□ -2.21
COL6A5A8TX70 THAP5P1-201ENST00000439089 262 ntBASIC1.27□□□□□ -2.21
COL6A5A8TX70 COX6CP12-201ENST00000446748 202 ntBASIC1.27□□□□□ -2.21
COL6A5A8TX70 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC1.27□□□□□ -2.21
COL6A5A8TX70 AC104986.1-201ENST00000517978 436 ntBASIC1.27□□□□□ -2.21
COL6A5A8TX70 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC1.27□□□□□ -2.21
COL6A5A8TX70 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC1.27□□□□□ -2.21
COL6A5A8TX70 AC080078.3-201ENST00000605407 463 ntBASIC1.27□□□□□ -2.21
COL6A5A8TX70 AL138955.1-201ENST00000622881 1040 ntBASIC1.27□□□□□ -2.21
COL6A5A8TX70 MIR6073-201ENST00000352083 89 ntBASIC1.26□□□□□ -2.21
COL6A5A8TX70 RNU6-72P-201ENST00000384285 79 ntBASIC1.26□□□□□ -2.21
COL6A5A8TX70 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC1.26□□□□□ -2.21
COL6A5A8TX70 AL358176.2-201ENST00000425769 204 ntBASIC1.26□□□□□ -2.21
COL6A5A8TX70 RPL21P2-201ENST00000440049 481 ntBASIC1.26□□□□□ -2.21
COL6A5A8TX70 XKRY2-201ENST00000442362 1093 ntBASIC1.26□□□□□ -2.21
COL6A5A8TX70 AC089999.1-201ENST00000460336 374 ntBASIC1.26□□□□□ -2.21
COL6A5A8TX70 AC025033.1-201ENST00000463883 194 ntBASIC1.26□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 133.4 ms