Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC5.48□□□□□ -1.53
USP3Q9Y6I4 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC5.48□□□□□ -1.53
USP3Q9Y6I4 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.48□□□□□ -1.53
USP3Q9Y6I4 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC5.48□□□□□ -1.53
USP3Q9Y6I4 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
USP3Q9Y6I4 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
USP3Q9Y6I4 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC5.48□□□□□ -1.53
USP3Q9Y6I4 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC5.48□□□□□ -1.53
USP3Q9Y6I4 AC005332.5-201ENST00000591222 2919 ntBASIC5.47□□□□□ -1.53
USP3Q9Y6I4 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC5.47□□□□□ -1.53
USP3Q9Y6I4 AC125336.1-201ENST00000508893 2827 ntBASIC5.47□□□□□ -1.53
USP3Q9Y6I4 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
USP3Q9Y6I4 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC5.47□□□□□ -1.53
USP3Q9Y6I4 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
USP3Q9Y6I4 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
USP3Q9Y6I4 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
USP3Q9Y6I4 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
USP3Q9Y6I4 FHIT-201ENST00000341848 174 ntTSL 3 BASIC5.47□□□□□ -1.53
USP3Q9Y6I4 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
USP3Q9Y6I4 OR1L6-202ENST00000373684 1044 ntBASIC5.47□□□□□ -1.53
USP3Q9Y6I4 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
USP3Q9Y6I4 Y_RNA.416-201ENST00000384014 113 ntBASIC5.47□□□□□ -1.53
USP3Q9Y6I4 RNU6-611P-201ENST00000384276 104 ntBASIC5.47□□□□□ -1.53
USP3Q9Y6I4 RNU6-933P-201ENST00000384424 107 ntBASIC5.47□□□□□ -1.53
USP3Q9Y6I4 AL445529.1-201ENST00000398713 389 ntBASIC5.47□□□□□ -1.53
USP3Q9Y6I4 MTATP6P29-201ENST00000415057 132 ntBASIC5.47□□□□□ -1.53
USP3Q9Y6I4 AC004866.2-201ENST00000438285 481 ntBASIC5.47□□□□□ -1.53
USP3Q9Y6I4 RPS29P10-201ENST00000439197 166 ntBASIC5.47□□□□□ -1.53
USP3Q9Y6I4 TPT1P13-201ENST00000449760 499 ntBASIC5.47□□□□□ -1.53
USP3Q9Y6I4 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC5.47□□□□□ -1.53
USP3Q9Y6I4 AC092647.2-201ENST00000452998 253 ntBASIC5.47□□□□□ -1.53
USP3Q9Y6I4 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC5.47□□□□□ -1.53
USP3Q9Y6I4 AC098976.1-201ENST00000513014 541 ntBASIC5.47□□□□□ -1.53
USP3Q9Y6I4 Y_RNA.673-201ENST00000516306 88 ntBASIC5.47□□□□□ -1.53
USP3Q9Y6I4 AC027308.1-201ENST00000517993 110 ntBASIC5.47□□□□□ -1.53
USP3Q9Y6I4 AC022790.1-201ENST00000522872 204 ntBASIC5.47□□□□□ -1.53
USP3Q9Y6I4 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC5.47□□□□□ -1.53
USP3Q9Y6I4 AP003733.2-201ENST00000529409 171 ntBASIC5.47□□□□□ -1.53
USP3Q9Y6I4 CBX3P8-201ENST00000532412 525 ntBASIC5.47□□□□□ -1.53
USP3Q9Y6I4 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC5.47□□□□□ -1.53
USP3Q9Y6I4 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC5.47□□□□□ -1.53
USP3Q9Y6I4 OR4H12P-201ENST00000556269 907 ntBASIC5.47□□□□□ -1.53
USP3Q9Y6I4 AC090517.1-201ENST00000569307 266 ntBASIC5.47□□□□□ -1.53
USP3Q9Y6I4 RN7SL708P-201ENST00000580952 299 ntBASIC5.47□□□□□ -1.53
USP3Q9Y6I4 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
USP3Q9Y6I4 AC006116.3-201ENST00000592968 361 ntBASIC5.47□□□□□ -1.53
USP3Q9Y6I4 GMFG-202ENST00000594700 397 ntTSL 2 BASIC5.47□□□□□ -1.53
USP3Q9Y6I4 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC5.47□□□□□ -1.53
USP3Q9Y6I4 AC009779.6-201ENST00000603972 165 ntBASIC5.47□□□□□ -1.53
USP3Q9Y6I4 WDR75-207ENST00000631047 270 ntTSL 5 BASIC5.47□□□□□ -1.53
USP3Q9Y6I4 AL596275.2-204ENST00000641628 552 ntBASIC5.47□□□□□ -1.53
USP3Q9Y6I4 AL596275.2-206ENST00000641957 626 ntBASIC5.47□□□□□ -1.53
USP3Q9Y6I4 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
USP3Q9Y6I4 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
USP3Q9Y6I4 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
USP3Q9Y6I4 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
USP3Q9Y6I4 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC5.47□□□□□ -1.53
USP3Q9Y6I4 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
USP3Q9Y6I4 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
USP3Q9Y6I4 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
USP3Q9Y6I4 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.46□□□□□ -1.53
USP3Q9Y6I4 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
USP3Q9Y6I4 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
USP3Q9Y6I4 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
USP3Q9Y6I4 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
USP3Q9Y6I4 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
USP3Q9Y6I4 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
USP3Q9Y6I4 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.54
USP3Q9Y6I4 MIR133A2-201ENST00000347538 102 ntBASIC5.46□□□□□ -1.54
USP3Q9Y6I4 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
USP3Q9Y6I4 AC092447.6-201ENST00000414578 210 ntBASIC5.46□□□□□ -1.54
USP3Q9Y6I4 RPL23AP27-201ENST00000415161 451 ntBASIC5.46□□□□□ -1.54
USP3Q9Y6I4 RPL21P90-201ENST00000415692 466 ntBASIC5.46□□□□□ -1.54
USP3Q9Y6I4 RPS27AP12-201ENST00000429552 465 ntBASIC5.46□□□□□ -1.54
USP3Q9Y6I4 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
USP3Q9Y6I4 CEACAMP6-201ENST00000452007 574 ntBASIC5.46□□□□□ -1.54
USP3Q9Y6I4 AC097484.1-201ENST00000471148 389 ntBASIC5.46□□□□□ -1.54
USP3Q9Y6I4 RPS18P6-201ENST00000476880 458 ntBASIC5.46□□□□□ -1.54
USP3Q9Y6I4 RPS27AP13-201ENST00000498403 237 ntBASIC5.46□□□□□ -1.54
USP3Q9Y6I4 HMGB1P35-201ENST00000503360 598 ntBASIC5.46□□□□□ -1.54
USP3Q9Y6I4 SNORA31.6-201ENST00000516241 130 ntBASIC5.46□□□□□ -1.54
USP3Q9Y6I4 RNU6-897P-201ENST00000517135 105 ntBASIC5.46□□□□□ -1.54
USP3Q9Y6I4 SNORA81.3-201ENST00000517283 198 ntBASIC5.46□□□□□ -1.54
USP3Q9Y6I4 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC5.46□□□□□ -1.54
USP3Q9Y6I4 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC5.46□□□□□ -1.54
USP3Q9Y6I4 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC5.46□□□□□ -1.54
USP3Q9Y6I4 AC040958.1-201ENST00000561102 201 ntBASIC5.46□□□□□ -1.54
USP3Q9Y6I4 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC5.46□□□□□ -1.54
USP3Q9Y6I4 MIR3691-201ENST00000578066 90 ntBASIC5.46□□□□□ -1.54
USP3Q9Y6I4 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC5.46□□□□□ -1.54
USP3Q9Y6I4 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC5.46□□□□□ -1.54
USP3Q9Y6I4 MIR4716-201ENST00000579628 84 ntBASIC5.46□□□□□ -1.54
USP3Q9Y6I4 AC118658.2-201ENST00000618697 459 ntBASIC5.46□□□□□ -1.54
USP3Q9Y6I4 FP236240.3-201ENST00000623061 327 ntBASIC5.46□□□□□ -1.54
USP3Q9Y6I4 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC5.46□□□□□ -1.54
USP3Q9Y6I4 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC5.46□□□□□ -1.54
USP3Q9Y6I4 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.54
USP3Q9Y6I4 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC5.46□□□□□ -1.54
USP3Q9Y6I4 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
USP3Q9Y6I4 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC5.46□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 153.8 ms