Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.42□□□□□ -1.7
DDX56Q9NY93 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.42□□□□□ -1.7
DDX56Q9NY93 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
DDX56Q9NY93 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.42□□□□□ -1.7
DDX56Q9NY93 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.42□□□□□ -1.7
DDX56Q9NY93 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
DDX56Q9NY93 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
DDX56Q9NY93 AC010733.2-201ENST00000589496 5702 ntBASIC4.41□□□□□ -1.7
DDX56Q9NY93 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
DDX56Q9NY93 AC007785.2-201ENST00000598627 1916 ntBASIC4.41□□□□□ -1.7
DDX56Q9NY93 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
DDX56Q9NY93 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC4.41□□□□□ -1.7
DDX56Q9NY93 OR5J1P-201ENST00000313544 939 ntBASIC4.41□□□□□ -1.7
DDX56Q9NY93 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.41□□□□□ -1.7
DDX56Q9NY93 Y_RNA.41-201ENST00000362646 102 ntBASIC4.41□□□□□ -1.7
DDX56Q9NY93 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
DDX56Q9NY93 RNU6-817P-201ENST00000391083 104 ntBASIC4.41□□□□□ -1.7
DDX56Q9NY93 Y_RNA.599-201ENST00000410489 109 ntBASIC4.41□□□□□ -1.7
DDX56Q9NY93 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
DDX56Q9NY93 OR5BE1P-201ENST00000425977 939 ntBASIC4.41□□□□□ -1.7
DDX56Q9NY93 AC104651.1-201ENST00000427559 735 ntBASIC4.41□□□□□ -1.7
DDX56Q9NY93 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC4.41□□□□□ -1.7
DDX56Q9NY93 RPS20P5-201ENST00000434808 360 ntBASIC4.41□□□□□ -1.7
DDX56Q9NY93 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC4.41□□□□□ -1.7
DDX56Q9NY93 FABP3P2-201ENST00000453169 399 ntBASIC4.41□□□□□ -1.7
DDX56Q9NY93 RPS29P19-201ENST00000479709 171 ntBASIC4.41□□□□□ -1.7
DDX56Q9NY93 AL160314.1-201ENST00000490836 438 ntBASIC4.41□□□□□ -1.7
DDX56Q9NY93 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC4.41□□□□□ -1.7
DDX56Q9NY93 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC4.41□□□□□ -1.7
DDX56Q9NY93 SCARNA24.1-201ENST00000516465 137 ntBASIC4.41□□□□□ -1.7
DDX56Q9NY93 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC4.41□□□□□ -1.7
DDX56Q9NY93 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC4.41□□□□□ -1.7
DDX56Q9NY93 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC4.41□□□□□ -1.7
DDX56Q9NY93 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC4.41□□□□□ -1.7
DDX56Q9NY93 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC4.41□□□□□ -1.7
DDX56Q9NY93 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC4.41□□□□□ -1.7
DDX56Q9NY93 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.41□□□□□ -1.7
DDX56Q9NY93 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.41□□□□□ -1.7
DDX56Q9NY93 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC4.41□□□□□ -1.7
DDX56Q9NY93 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.41□□□□□ -1.7
DDX56Q9NY93 DEFB131E-202ENST00000602581 683 ntBASIC4.41□□□□□ -1.7
DDX56Q9NY93 AC004492.1-201ENST00000607036 742 ntBASIC4.41□□□□□ -1.7
DDX56Q9NY93 AC064801.1-201ENST00000612025 407 ntBASIC4.41□□□□□ -1.7
DDX56Q9NY93 AC034102.8-201ENST00000615146 484 ntBASIC4.41□□□□□ -1.7
DDX56Q9NY93 OR5BE1P-202ENST00000641168 1176 ntBASIC4.41□□□□□ -1.7
DDX56Q9NY93 MTND5P29-201ENST00000458676 1807 ntBASIC4.41□□□□□ -1.7
DDX56Q9NY93 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.41□□□□□ -1.7
DDX56Q9NY93 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
DDX56Q9NY93 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
DDX56Q9NY93 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
DDX56Q9NY93 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.7
DDX56Q9NY93 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC4.4□□□□□ -1.7
DDX56Q9NY93 MFSD8-216ENST00000641147 4009 ntBASIC4.4□□□□□ -1.7
DDX56Q9NY93 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
DDX56Q9NY93 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
DDX56Q9NY93 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
DDX56Q9NY93 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC4.4□□□□□ -1.7
DDX56Q9NY93 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
DDX56Q9NY93 Y_RNA.3-201ENST00000362331 103 ntBASIC4.4□□□□□ -1.71
DDX56Q9NY93 SNORD74.4-201ENST00000364129 80 ntBASIC4.4□□□□□ -1.71
DDX56Q9NY93 RNA5SP505-201ENST00000364748 108 ntBASIC4.4□□□□□ -1.71
DDX56Q9NY93 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
DDX56Q9NY93 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
DDX56Q9NY93 RNU6-1103P-201ENST00000384150 107 ntBASIC4.4□□□□□ -1.71
DDX56Q9NY93 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
DDX56Q9NY93 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
DDX56Q9NY93 RPS4XP3-201ENST00000398541 413 ntBASIC4.4□□□□□ -1.71
DDX56Q9NY93 AL583835.1-201ENST00000399570 407 ntBASIC4.4□□□□□ -1.71
DDX56Q9NY93 RAC1P3-201ENST00000416129 580 ntBASIC4.4□□□□□ -1.71
DDX56Q9NY93 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC4.4□□□□□ -1.71
DDX56Q9NY93 MTCO2P11-201ENST00000431069 680 ntBASIC4.4□□□□□ -1.71
DDX56Q9NY93 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC4.4□□□□□ -1.71
DDX56Q9NY93 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC4.4□□□□□ -1.71
DDX56Q9NY93 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC4.4□□□□□ -1.71
DDX56Q9NY93 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC4.4□□□□□ -1.71
DDX56Q9NY93 RPL23AP62-201ENST00000463396 453 ntBASIC4.4□□□□□ -1.71
DDX56Q9NY93 AC078785.3-201ENST00000476607 425 ntBASIC4.4□□□□□ -1.71
DDX56Q9NY93 RNU6-1282P-201ENST00000516735 96 ntBASIC4.4□□□□□ -1.71
DDX56Q9NY93 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC4.4□□□□□ -1.71
DDX56Q9NY93 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC4.4□□□□□ -1.71
DDX56Q9NY93 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.4□□□□□ -1.71
DDX56Q9NY93 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC4.4□□□□□ -1.71
DDX56Q9NY93 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.4□□□□□ -1.71
DDX56Q9NY93 AC080078.2-201ENST00000603766 501 ntBASIC4.4□□□□□ -1.71
DDX56Q9NY93 DPPA3P3-201ENST00000603842 430 ntBASIC4.4□□□□□ -1.71
DDX56Q9NY93 AC019193.2-201ENST00000610012 634 ntBASIC4.4□□□□□ -1.71
DDX56Q9NY93 FAM27D1-201ENST00000612308 341 ntBASIC4.4□□□□□ -1.71
DDX56Q9NY93 AC026585.1-201ENST00000619582 524 ntBASIC4.4□□□□□ -1.71
DDX56Q9NY93 AC068831.8-201ENST00000620171 435 ntBASIC4.4□□□□□ -1.71
DDX56Q9NY93 AC009161.2-201ENST00000624626 138 ntBASIC4.4□□□□□ -1.71
DDX56Q9NY93 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
DDX56Q9NY93 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC4.4□□□□□ -1.71
DDX56Q9NY93 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.4□□□□□ -1.71
DDX56Q9NY93 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC4.4□□□□□ -1.71
DDX56Q9NY93 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.4□□□□□ -1.71
DDX56Q9NY93 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.39□□□□□ -1.71
DDX56Q9NY93 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
DDX56Q9NY93 AC007256.1-201ENST00000392253 2765 ntBASIC4.39□□□□□ -1.71
DDX56Q9NY93 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
DDX56Q9NY93 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 166.9 ms