Protein–RNA interactions for Protein: Q9NXS3

KLHL28, Kelch-like protein 28, humanhuman

Predictions only

Length 571 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KLHL28Q9NXS3 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.76□□□□□ -1.97
KLHL28Q9NXS3 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC2.76□□□□□ -1.97
KLHL28Q9NXS3 TPTE2P4-201ENST00000258589 1605 ntBASIC2.75□□□□□ -1.97
KLHL28Q9NXS3 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
KLHL28Q9NXS3 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
KLHL28Q9NXS3 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.75□□□□□ -1.97
KLHL28Q9NXS3 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
KLHL28Q9NXS3 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
KLHL28Q9NXS3 AC073325.2-201ENST00000339545 159 ntBASIC2.75□□□□□ -1.97
KLHL28Q9NXS3 RNU6-198P-201ENST00000384258 104 ntBASIC2.75□□□□□ -1.97
KLHL28Q9NXS3 RNA5SP354-201ENST00000391247 136 ntBASIC2.75□□□□□ -1.97
KLHL28Q9NXS3 RPS3AP24-201ENST00000407896 734 ntBASIC2.75□□□□□ -1.97
KLHL28Q9NXS3 AC007435.1-201ENST00000421086 415 ntBASIC2.75□□□□□ -1.97
KLHL28Q9NXS3 RPL7L1P10-201ENST00000427790 463 ntBASIC2.75□□□□□ -1.97
KLHL28Q9NXS3 AC022018.1-201ENST00000430685 241 ntBASIC2.75□□□□□ -1.97
KLHL28Q9NXS3 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.75□□□□□ -1.97
KLHL28Q9NXS3 ARPC3P1-201ENST00000437218 533 ntBASIC2.75□□□□□ -1.97
KLHL28Q9NXS3 THAP5P1-201ENST00000439089 262 ntBASIC2.75□□□□□ -1.97
KLHL28Q9NXS3 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC2.75□□□□□ -1.97
KLHL28Q9NXS3 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC2.75□□□□□ -1.97
KLHL28Q9NXS3 AC008427.1-201ENST00000503102 655 ntBASIC2.75□□□□□ -1.97
KLHL28Q9NXS3 AC016550.1-201ENST00000505348 785 ntBASIC2.75□□□□□ -1.97
KLHL28Q9NXS3 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.75□□□□□ -1.97
KLHL28Q9NXS3 RNU6-798P-201ENST00000516912 103 ntBASIC2.75□□□□□ -1.97
KLHL28Q9NXS3 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
KLHL28Q9NXS3 HIGD1AP17-201ENST00000554576 276 ntBASIC2.75□□□□□ -1.97
KLHL28Q9NXS3 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC2.75□□□□□ -1.97
KLHL28Q9NXS3 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC2.75□□□□□ -1.97
KLHL28Q9NXS3 AC068620.3-201ENST00000602749 560 ntBASIC2.75□□□□□ -1.97
KLHL28Q9NXS3 AL161734.1-201ENST00000609720 557 ntBASIC2.75□□□□□ -1.97
KLHL28Q9NXS3 AL596245.1-201ENST00000618994 362 ntBASIC2.75□□□□□ -1.97
KLHL28Q9NXS3 AC007318.2-201ENST00000620999 243 ntBASIC2.75□□□□□ -1.97
KLHL28Q9NXS3 AC090772.4-201ENST00000623599 362 ntBASIC2.75□□□□□ -1.97
KLHL28Q9NXS3 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
KLHL28Q9NXS3 CDR1-202ENST00000625883 1485 ntBASIC2.75□□□□□ -1.97
KLHL28Q9NXS3 AC010680.1-201ENST00000590024 3590 ntBASIC2.75□□□□□ -1.97
KLHL28Q9NXS3 FAM35BP-202ENST00000497389 3337 ntBASIC2.75□□□□□ -1.97
KLHL28Q9NXS3 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
KLHL28Q9NXS3 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 RNU6-7-201ENST00000364784 107 ntBASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 RNU6-8-201ENST00000365467 107 ntBASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 SNORA44-201ENST00000384584 132 ntBASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 DHFRP6-201ENST00000401776 268 ntBASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 UQCRFS1P3-201ENST00000407697 385 ntBASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 ERMN-204ENST00000409925 556 ntTSL 4 BASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 RNA5SP344-201ENST00000411081 104 ntBASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 OFD1P1Y-201ENST00000411756 1225 ntBASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 PTP4A1P7-201ENST00000423476 514 ntBASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 MTND2P20-201ENST00000440805 661 ntBASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 AC025750.2-201ENST00000442609 450 ntBASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 TRGVB-201ENST00000453257 471 ntBASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 snoU13.28-201ENST00000459235 104 ntBASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 AC096576.1-201ENST00000489014 359 ntBASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 AIG1P1-201ENST00000503376 148 ntBASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 AC114322.1-201ENST00000506771 926 ntBASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 AC098799.2-201ENST00000509466 868 ntBASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 RN7SKP31-201ENST00000516354 278 ntBASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 SNORA31.21-201ENST00000517180 77 ntBASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 AC103783.1-201ENST00000520506 373 ntBASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 AC022861.1-201ENST00000522981 663 ntBASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 PSMA2P1-201ENST00000526365 646 ntBASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 AC034105.3-201ENST00000565294 442 ntBASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 AL035413.2-201ENST00000604801 525 ntBASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 HNRNPDLP4-201ENST00000605144 301 ntBASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 AC069304.2-201ENST00000605154 435 ntBASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 DUXAP10-204ENST00000612052 616 ntBASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 AC010338.1-201ENST00000621823 717 ntBASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 AC126544.2-201ENST00000625174 749 ntBASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 AC012321.1-201ENST00000561622 1588 ntBASIC2.74□□□□□ -1.97
KLHL28Q9NXS3 CPD-202ENST00000543464 4007 ntTSL 2 BASIC2.73□□□□□ -1.97
KLHL28Q9NXS3 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
KLHL28Q9NXS3 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
KLHL28Q9NXS3 SNORA71.1-201ENST00000364523 117 ntBASIC2.73□□□□□ -1.97
KLHL28Q9NXS3 SNORA9.2-201ENST00000365361 133 ntBASIC2.73□□□□□ -1.97
KLHL28Q9NXS3 MIR627-201ENST00000384979 97 ntBASIC2.73□□□□□ -1.97
KLHL28Q9NXS3 Y_RNA.578-201ENST00000390903 88 ntBASIC2.73□□□□□ -1.97
KLHL28Q9NXS3 AL356057.2-201ENST00000403318 432 ntBASIC2.73□□□□□ -1.97
KLHL28Q9NXS3 AL161449.1-201ENST00000414531 1199 ntBASIC2.73□□□□□ -1.97
KLHL28Q9NXS3 AL451074.5-201ENST00000415894 435 ntBASIC2.73□□□□□ -1.97
KLHL28Q9NXS3 CCDC58P2-201ENST00000417131 366 ntBASIC2.73□□□□□ -1.97
KLHL28Q9NXS3 MTND4P3-201ENST00000417829 541 ntBASIC2.73□□□□□ -1.97
KLHL28Q9NXS3 MTCYBP45-201ENST00000435243 565 ntBASIC2.73□□□□□ -1.97
KLHL28Q9NXS3 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC2.73□□□□□ -1.97
KLHL28Q9NXS3 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC2.73□□□□□ -1.97
KLHL28Q9NXS3 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC2.73□□□□□ -1.97
KLHL28Q9NXS3 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC2.73□□□□□ -1.97
KLHL28Q9NXS3 OR2A20P-203ENST00000498397 1268 ntBASIC2.73□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms