Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC017037.2-201ENST00000513850 890 ntBASIC3.08□□□□□ -1.92
VPS39Q96JC1 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC3.08□□□□□ -1.92
VPS39Q96JC1 RN7SKP43-201ENST00000516173 320 ntBASIC3.08□□□□□ -1.92
VPS39Q96JC1 MTCO1P47-201ENST00000523889 1271 ntBASIC3.08□□□□□ -1.92
VPS39Q96JC1 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC3.08□□□□□ -1.92
VPS39Q96JC1 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC3.08□□□□□ -1.92
VPS39Q96JC1 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC3.08□□□□□ -1.92
VPS39Q96JC1 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC3.08□□□□□ -1.92
VPS39Q96JC1 AGGF1P5-201ENST00000567900 919 ntBASIC3.08□□□□□ -1.92
VPS39Q96JC1 AC090615.1-201ENST00000577519 154 ntBASIC3.08□□□□□ -1.92
VPS39Q96JC1 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC3.08□□□□□ -1.92
VPS39Q96JC1 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC3.08□□□□□ -1.92
VPS39Q96JC1 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC3.08□□□□□ -1.92
VPS39Q96JC1 RPP40P2-201ENST00000603596 712 ntBASIC3.08□□□□□ -1.92
VPS39Q96JC1 AC107075.1-201ENST00000613695 314 ntBASIC3.08□□□□□ -1.92
VPS39Q96JC1 AC090132.2-201ENST00000615881 347 ntBASIC3.08□□□□□ -1.92
VPS39Q96JC1 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC3.08□□□□□ -1.92
VPS39Q96JC1 AC099506.2-201ENST00000623074 221 ntBASIC3.08□□□□□ -1.92
VPS39Q96JC1 OR5H6-203ENST00000642105 978 ntBASIC3.08□□□□□ -1.92
VPS39Q96JC1 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
VPS39Q96JC1 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
VPS39Q96JC1 ANKRD26P2-201ENST00000445530 1710 ntBASIC3.07□□□□□ -1.92
VPS39Q96JC1 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
VPS39Q96JC1 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.07□□□□□ -1.92
VPS39Q96JC1 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
VPS39Q96JC1 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
VPS39Q96JC1 SNORD56.5-201ENST00000364281 72 ntBASIC3.07□□□□□ -1.92
VPS39Q96JC1 RNU6-413P-201ENST00000384115 107 ntBASIC3.07□□□□□ -1.92
VPS39Q96JC1 SNORA7.4-201ENST00000384249 137 ntBASIC3.07□□□□□ -1.92
VPS39Q96JC1 FO393413.1-201ENST00000402892 195 ntBASIC3.07□□□□□ -1.92
VPS39Q96JC1 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.07□□□□□ -1.92
VPS39Q96JC1 MTCO2P5-201ENST00000422621 426 ntBASIC3.07□□□□□ -1.92
VPS39Q96JC1 SDCBPP1-201ENST00000440192 890 ntBASIC3.07□□□□□ -1.92
VPS39Q96JC1 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC3.07□□□□□ -1.92
VPS39Q96JC1 Z75741.1-201ENST00000446793 314 ntBASIC3.07□□□□□ -1.92
VPS39Q96JC1 AL606517.1-201ENST00000446914 387 ntBASIC3.07□□□□□ -1.92
VPS39Q96JC1 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC3.07□□□□□ -1.92
VPS39Q96JC1 RN7SL863P-201ENST00000462370 296 ntBASIC3.07□□□□□ -1.92
VPS39Q96JC1 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC3.07□□□□□ -1.92
VPS39Q96JC1 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC3.07□□□□□ -1.92
VPS39Q96JC1 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.07□□□□□ -1.92
VPS39Q96JC1 AP001372.4-201ENST00000524889 472 ntBASIC3.07□□□□□ -1.92
VPS39Q96JC1 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
VPS39Q96JC1 AC128657.1-201ENST00000549459 145 ntBASIC3.07□□□□□ -1.92
VPS39Q96JC1 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC3.07□□□□□ -1.92
VPS39Q96JC1 AP000240.1-201ENST00000609910 452 ntBASIC3.07□□□□□ -1.92
VPS39Q96JC1 AC004852.3-201ENST00000614131 326 ntBASIC3.07□□□□□ -1.92
VPS39Q96JC1 MIR6130-201ENST00000619419 109 ntBASIC3.07□□□□□ -1.92
VPS39Q96JC1 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC3.07□□□□□ -1.92
VPS39Q96JC1 AC079597.1-201ENST00000624306 508 ntBASIC3.07□□□□□ -1.92
VPS39Q96JC1 MIR622-201ENST00000638396 96 ntBASIC3.07□□□□□ -1.92
VPS39Q96JC1 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
VPS39Q96JC1 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
VPS39Q96JC1 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
VPS39Q96JC1 AC005539.1-201ENST00000443768 1479 ntBASIC3.07□□□□□ -1.92
VPS39Q96JC1 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.07□□□□□ -1.92
VPS39Q96JC1 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
VPS39Q96JC1 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
VPS39Q96JC1 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
VPS39Q96JC1 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
VPS39Q96JC1 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
VPS39Q96JC1 RNU1-105P-201ENST00000363470 161 ntBASIC3.06□□□□□ -1.92
VPS39Q96JC1 Y_RNA.192-201ENST00000363977 102 ntBASIC3.06□□□□□ -1.92
VPS39Q96JC1 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC3.06□□□□□ -1.92
VPS39Q96JC1 RNA5SP354-201ENST00000391247 136 ntBASIC3.06□□□□□ -1.92
VPS39Q96JC1 RPL21P75-201ENST00000396599 483 ntBASIC3.06□□□□□ -1.92
VPS39Q96JC1 RPL21P28-201ENST00000401418 483 ntBASIC3.06□□□□□ -1.92
VPS39Q96JC1 AL592114.1-201ENST00000403842 483 ntBASIC3.06□□□□□ -1.92
VPS39Q96JC1 RN7SKP123-201ENST00000410732 291 ntBASIC3.06□□□□□ -1.92
VPS39Q96JC1 RPS3AP25-201ENST00000411660 793 ntBASIC3.06□□□□□ -1.92
VPS39Q96JC1 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.06□□□□□ -1.92
VPS39Q96JC1 AL389915.1-201ENST00000422463 466 ntBASIC3.06□□□□□ -1.92
VPS39Q96JC1 USP9YP24-201ENST00000434374 697 ntBASIC3.06□□□□□ -1.92
VPS39Q96JC1 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC3.06□□□□□ -1.92
VPS39Q96JC1 USP9YP17-201ENST00000444617 696 ntBASIC3.06□□□□□ -1.92
VPS39Q96JC1 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC3.06□□□□□ -1.92
VPS39Q96JC1 PTENP1-201ENST00000447117 1215 ntBASIC3.06□□□□□ -1.92
VPS39Q96JC1 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC3.06□□□□□ -1.92
VPS39Q96JC1 OFD1P7Y-201ENST00000454643 1155 ntBASIC3.06□□□□□ -1.92
VPS39Q96JC1 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
VPS39Q96JC1 AL590639.1-201ENST00000456484 337 ntBASIC3.06□□□□□ -1.92
VPS39Q96JC1 RPL21P39-201ENST00000463605 483 ntBASIC3.06□□□□□ -1.92
VPS39Q96JC1 RPL21P93-201ENST00000480465 489 ntBASIC3.06□□□□□ -1.92
VPS39Q96JC1 AC233702.1-201ENST00000482905 502 ntBASIC3.06□□□□□ -1.92
VPS39Q96JC1 AC087190.1-201ENST00000484462 480 ntBASIC3.06□□□□□ -1.92
VPS39Q96JC1 AC093591.1-201ENST00000491435 481 ntBASIC3.06□□□□□ -1.92
VPS39Q96JC1 RPL21P16-201ENST00000495531 483 ntBASIC3.06□□□□□ -1.92
VPS39Q96JC1 HMGB1P28-201ENST00000507778 552 ntBASIC3.06□□□□□ -1.92
VPS39Q96JC1 RNU6-928P-201ENST00000516876 104 ntBASIC3.06□□□□□ -1.92
VPS39Q96JC1 AC005832.3-201ENST00000537929 631 ntBASIC3.06□□□□□ -1.92
VPS39Q96JC1 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.06□□□□□ -1.92
VPS39Q96JC1 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC3.06□□□□□ -1.92
VPS39Q96JC1 AP001269.3-201ENST00000588718 329 ntBASIC3.06□□□□□ -1.92
VPS39Q96JC1 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.06□□□□□ -1.92
VPS39Q96JC1 AC078899.3-201ENST00000599065 212 ntBASIC3.06□□□□□ -1.92
VPS39Q96JC1 DUXAP3-201ENST00000603616 594 ntBASIC3.06□□□□□ -1.92
VPS39Q96JC1 AL450336.1-201ENST00000605180 586 ntBASIC3.06□□□□□ -1.92
VPS39Q96JC1 MIR92B-201ENST00000607575 96 ntBASIC3.06□□□□□ -1.92
VPS39Q96JC1 AC131902.3-201ENST00000611767 581 ntBASIC3.06□□□□□ -1.92
VPS39Q96JC1 AC243773.3-201ENST00000613270 256 ntBASIC3.06□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 180.6 ms