Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 MTND1P2-201ENST00000430604 821 ntBASIC4.43□□□□□ -1.7
VPS53Q5VIR6 RPL21P112-201ENST00000434403 463 ntBASIC4.43□□□□□ -1.7
VPS53Q5VIR6 AC009961.2-201ENST00000435771 251 ntBASIC4.43□□□□□ -1.7
VPS53Q5VIR6 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC4.43□□□□□ -1.7
VPS53Q5VIR6 RGS5-217ENST00000451759 835 ntTSL 3 BASIC4.43□□□□□ -1.7
VPS53Q5VIR6 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC4.43□□□□□ -1.7
VPS53Q5VIR6 OFD1P4Y-201ENST00000455273 1179 ntBASIC4.43□□□□□ -1.7
VPS53Q5VIR6 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
VPS53Q5VIR6 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC4.43□□□□□ -1.7
VPS53Q5VIR6 AC116353.2-201ENST00000505332 712 ntBASIC4.43□□□□□ -1.7
VPS53Q5VIR6 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC4.43□□□□□ -1.7
VPS53Q5VIR6 AC108078.1-201ENST00000508073 725 ntBASIC4.43□□□□□ -1.7
VPS53Q5VIR6 SAP18P1-201ENST00000512058 390 ntBASIC4.43□□□□□ -1.7
VPS53Q5VIR6 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC4.43□□□□□ -1.7
VPS53Q5VIR6 RNU6-718P-201ENST00000516166 105 ntBASIC4.43□□□□□ -1.7
VPS53Q5VIR6 NRON-201ENST00000517270 370 ntBASIC4.43□□□□□ -1.7
VPS53Q5VIR6 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC4.43□□□□□ -1.7
VPS53Q5VIR6 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC4.43□□□□□ -1.7
VPS53Q5VIR6 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC4.43□□□□□ -1.7
VPS53Q5VIR6 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC4.43□□□□□ -1.7
VPS53Q5VIR6 AL353997.4-201ENST00000586196 166 ntBASIC4.43□□□□□ -1.7
VPS53Q5VIR6 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC4.43□□□□□ -1.7
VPS53Q5VIR6 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC4.43□□□□□ -1.7
VPS53Q5VIR6 BBIP1P1-201ENST00000602999 279 ntBASIC4.43□□□□□ -1.7
VPS53Q5VIR6 AL049634.3-201ENST00000604968 457 ntBASIC4.43□□□□□ -1.7
VPS53Q5VIR6 AC006329.2-201ENST00000611491 394 ntBASIC4.43□□□□□ -1.7
VPS53Q5VIR6 AL008636.1-201ENST00000625038 1018 ntBASIC4.43□□□□□ -1.7
VPS53Q5VIR6 PISRT1-201ENST00000626175 531 ntBASIC4.43□□□□□ -1.7
VPS53Q5VIR6 AC012442.3-202ENST00000636742 206 ntBASIC4.43□□□□□ -1.7
VPS53Q5VIR6 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
VPS53Q5VIR6 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS53Q5VIR6 AC006504.1-201ENST00000562493 3666 ntBASIC4.43□□□□□ -1.7
VPS53Q5VIR6 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
VPS53Q5VIR6 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
VPS53Q5VIR6 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
VPS53Q5VIR6 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC4.42□□□□□ -1.7
VPS53Q5VIR6 HSPA8P1-201ENST00000425843 1833 ntBASIC4.42□□□□□ -1.7
VPS53Q5VIR6 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
VPS53Q5VIR6 RNU6-989P-201ENST00000362756 107 ntBASIC4.42□□□□□ -1.7
VPS53Q5VIR6 SNORA7.2-201ENST00000364446 145 ntBASIC4.42□□□□□ -1.7
VPS53Q5VIR6 RNU6-343P-201ENST00000364709 104 ntBASIC4.42□□□□□ -1.7
VPS53Q5VIR6 SNORA73.2-201ENST00000364946 201 ntBASIC4.42□□□□□ -1.7
VPS53Q5VIR6 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
VPS53Q5VIR6 AL391417.1-201ENST00000404100 426 ntBASIC4.42□□□□□ -1.7
VPS53Q5VIR6 AL138878.1-201ENST00000405131 347 ntBASIC4.42□□□□□ -1.7
VPS53Q5VIR6 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC4.42□□□□□ -1.7
VPS53Q5VIR6 AC000111.3-201ENST00000433478 193 ntBASIC4.42□□□□□ -1.7
VPS53Q5VIR6 MRPS18BP2-201ENST00000434310 759 ntBASIC4.42□□□□□ -1.7
VPS53Q5VIR6 HSPE1P28-201ENST00000443139 211 ntBASIC4.42□□□□□ -1.7
VPS53Q5VIR6 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC4.42□□□□□ -1.7
VPS53Q5VIR6 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC4.42□□□□□ -1.7
VPS53Q5VIR6 AC034222.1-201ENST00000494052 532 ntBASIC4.42□□□□□ -1.7
VPS53Q5VIR6 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC4.42□□□□□ -1.7
VPS53Q5VIR6 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC4.42□□□□□ -1.7
VPS53Q5VIR6 FTH1P9-201ENST00000513251 355 ntBASIC4.42□□□□□ -1.7
VPS53Q5VIR6 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC4.42□□□□□ -1.7
VPS53Q5VIR6 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
VPS53Q5VIR6 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC4.42□□□□□ -1.7
VPS53Q5VIR6 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC4.42□□□□□ -1.7
VPS53Q5VIR6 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC4.42□□□□□ -1.7
VPS53Q5VIR6 AC007424.1-203ENST00000554613 687 ntBASIC4.42□□□□□ -1.7
VPS53Q5VIR6 RPS3AP4-201ENST00000555161 764 ntBASIC4.42□□□□□ -1.7
VPS53Q5VIR6 AL121576.1-201ENST00000556055 276 ntBASIC4.42□□□□□ -1.7
VPS53Q5VIR6 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC4.42□□□□□ -1.7
VPS53Q5VIR6 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC4.42□□□□□ -1.7
VPS53Q5VIR6 NRBF2P1-201ENST00000587407 859 ntBASIC4.42□□□□□ -1.7
VPS53Q5VIR6 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC4.42□□□□□ -1.7
VPS53Q5VIR6 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC4.42□□□□□ -1.7
VPS53Q5VIR6 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC4.42□□□□□ -1.7
VPS53Q5VIR6 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC4.42□□□□□ -1.7
VPS53Q5VIR6 AL157786.1-207ENST00000627771 695 ntBASIC4.42□□□□□ -1.7
VPS53Q5VIR6 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
VPS53Q5VIR6 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
VPS53Q5VIR6 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
VPS53Q5VIR6 ZNF285B-201ENST00000561698 1767 ntBASIC4.42□□□□□ -1.7
VPS53Q5VIR6 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
VPS53Q5VIR6 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC4.42□□□□□ -1.7
VPS53Q5VIR6 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
VPS53Q5VIR6 AC106871.1-201ENST00000568324 3102 ntBASIC4.41□□□□□ -1.7
VPS53Q5VIR6 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC4.41□□□□□ -1.7
VPS53Q5VIR6 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
VPS53Q5VIR6 AC073073.2-201ENST00000609827 2578 ntBASIC4.41□□□□□ -1.7
VPS53Q5VIR6 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
VPS53Q5VIR6 SNORA31-201ENST00000362607 130 ntBASIC4.41□□□□□ -1.7
VPS53Q5VIR6 Y_RNA.88-201ENST00000363029 99 ntBASIC4.41□□□□□ -1.7
VPS53Q5VIR6 Y_RNA.296-201ENST00000364930 108 ntBASIC4.41□□□□□ -1.7
VPS53Q5VIR6 GSTA9P-201ENST00000406231 611 ntBASIC4.41□□□□□ -1.7
VPS53Q5VIR6 RNU6ATAC34P-201ENST00000408879 121 ntBASIC4.41□□□□□ -1.7
VPS53Q5VIR6 SYF2P2-201ENST00000417620 583 ntBASIC4.41□□□□□ -1.7
VPS53Q5VIR6 AC012065.2-201ENST00000421295 375 ntBASIC4.41□□□□□ -1.7
VPS53Q5VIR6 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC4.41□□□□□ -1.7
VPS53Q5VIR6 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC4.41□□□□□ -1.7
VPS53Q5VIR6 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC4.41□□□□□ -1.7
VPS53Q5VIR6 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC4.41□□□□□ -1.7
VPS53Q5VIR6 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC4.41□□□□□ -1.7
VPS53Q5VIR6 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC4.41□□□□□ -1.7
VPS53Q5VIR6 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC4.41□□□□□ -1.7
VPS53Q5VIR6 KCTD9P5-201ENST00000504141 1170 ntBASIC4.41□□□□□ -1.7
VPS53Q5VIR6 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC4.41□□□□□ -1.7
VPS53Q5VIR6 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC4.41□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms