Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 HMGB3P12-201ENST00000438745 556 ntBASIC4.02□□□□□ -1.77
PTCHD3Q3KNS1 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC4.02□□□□□ -1.77
PTCHD3Q3KNS1 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC4.02□□□□□ -1.77
PTCHD3Q3KNS1 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC4.02□□□□□ -1.77
PTCHD3Q3KNS1 AC234775.1-201ENST00000454247 670 ntBASIC4.02□□□□□ -1.77
PTCHD3Q3KNS1 S100A11P1-201ENST00000477525 312 ntBASIC4.02□□□□□ -1.77
PTCHD3Q3KNS1 ALDH7A1P3-201ENST00000492517 345 ntBASIC4.02□□□□□ -1.77
PTCHD3Q3KNS1 AC068305.1-201ENST00000497406 726 ntBASIC4.02□□□□□ -1.77
PTCHD3Q3KNS1 AC074344.1-201ENST00000512823 224 ntBASIC4.02□□□□□ -1.77
PTCHD3Q3KNS1 DEFB108D-201ENST00000527787 222 ntBASIC4.02□□□□□ -1.77
PTCHD3Q3KNS1 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC4.02□□□□□ -1.77
PTCHD3Q3KNS1 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC4.02□□□□□ -1.77
PTCHD3Q3KNS1 AC090616.5-202ENST00000582111 297 ntBASIC4.02□□□□□ -1.77
PTCHD3Q3KNS1 AC098848.2-201ENST00000588023 330 ntBASIC4.02□□□□□ -1.77
PTCHD3Q3KNS1 AC008536.2-201ENST00000607284 349 ntBASIC4.02□□□□□ -1.77
PTCHD3Q3KNS1 MIR6867-201ENST00000610636 67 ntBASIC4.02□□□□□ -1.77
PTCHD3Q3KNS1 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC4.02□□□□□ -1.77
PTCHD3Q3KNS1 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC4.02□□□□□ -1.77
PTCHD3Q3KNS1 AP005264.7-201ENST00000625003 745 ntBASIC4.02□□□□□ -1.77
PTCHD3Q3KNS1 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
PTCHD3Q3KNS1 ZNF962P-201ENST00000443465 3140 ntBASIC4.02□□□□□ -1.77
PTCHD3Q3KNS1 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.02□□□□□ -1.77
PTCHD3Q3KNS1 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 PNPT1P2-201ENST00000456768 2050 ntBASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 AL645937.1-201ENST00000641739 1652 ntBASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 Y_RNA.89-201ENST00000363031 102 ntBASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 SNORD56.2-201ENST00000363242 71 ntBASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 RNA5SP130-201ENST00000364431 114 ntBASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 AL109755.1-201ENST00000401791 649 ntBASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 RNU6-628P-201ENST00000410675 107 ntBASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 AC006011.1-201ENST00000442758 349 ntBASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 AL121871.1-201ENST00000443413 436 ntBASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 HSFY6P-201ENST00000445573 403 ntBASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 NFU1P2-201ENST00000448700 469 ntBASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 AL451050.1-201ENST00000450126 415 ntBASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 AC083798.1-201ENST00000472671 131 ntBASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 RPS3AP50-201ENST00000487064 803 ntBASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 RNU6-1220P-201ENST00000517126 108 ntBASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 AC100870.1-201ENST00000522035 505 ntBASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 SMILR-201ENST00000533992 553 ntTSL 4 BASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 AC128657.1-201ENST00000549459 145 ntBASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 RPL21P12-201ENST00000559810 515 ntBASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 AC008752.3-201ENST00000588113 712 ntBASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 GLUD1P4-201ENST00000590914 418 ntBASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 AL162413.1-201ENST00000603198 110 ntBASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 AC025449.1-201ENST00000603896 529 ntBASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 AC007621.1-201ENST00000604544 437 ntBASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 AP001596.2-201ENST00000608410 312 ntBASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 AC022306.2-201ENST00000617563 647 ntBASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 AC244100.1-202ENST00000621554 382 ntBASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 DUXAP9-208ENST00000622815 614 ntBASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 AC112484.5-201ENST00000624189 228 ntBASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 AC019226.1-201ENST00000625666 515 ntBASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 Z82217.1-201ENST00000625157 8149 ntBASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.01□□□□□ -1.77
PTCHD3Q3KNS1 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4□□□□□ -1.77
PTCHD3Q3KNS1 PAPPA-AS1-201ENST00000445861 2450 ntBASIC4□□□□□ -1.77
PTCHD3Q3KNS1 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
PTCHD3Q3KNS1 RNU6-1090P-201ENST00000364065 94 ntBASIC4□□□□□ -1.77
PTCHD3Q3KNS1 RNU6-534P-201ENST00000364877 106 ntBASIC4□□□□□ -1.77
PTCHD3Q3KNS1 RNA5SP283-201ENST00000365604 119 ntBASIC4□□□□□ -1.77
PTCHD3Q3KNS1 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4□□□□□ -1.77
PTCHD3Q3KNS1 RNU6-74P-201ENST00000384235 107 ntBASIC4□□□□□ -1.77
PTCHD3Q3KNS1 RPL23AP48-201ENST00000406913 488 ntBASIC4□□□□□ -1.77
PTCHD3Q3KNS1 RNU4-65P-201ENST00000410473 140 ntBASIC4□□□□□ -1.77
PTCHD3Q3KNS1 RNA5SP104-201ENST00000410989 118 ntBASIC4□□□□□ -1.77
PTCHD3Q3KNS1 AMD1P2-201ENST00000412936 992 ntBASIC4□□□□□ -1.77
PTCHD3Q3KNS1 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC4□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 93.2 ms