Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
HDAC4P56524 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
HDAC4P56524 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
HDAC4P56524 AC093908.1-201ENST00000623125 8092 ntBASIC3.83□□□□□ -1.8
HDAC4P56524 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.83□□□□□ -1.8
HDAC4P56524 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
HDAC4P56524 RNU6-97P-201ENST00000363387 104 ntBASIC3.83□□□□□ -1.8
HDAC4P56524 RNU5E-5P-201ENST00000365379 116 ntBASIC3.83□□□□□ -1.8
HDAC4P56524 OR5H15-201ENST00000383696 930 ntBASIC3.83□□□□□ -1.8
HDAC4P56524 RNU6-1119P-201ENST00000384349 108 ntBASIC3.83□□□□□ -1.8
HDAC4P56524 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
HDAC4P56524 AL590704.1-201ENST00000402856 794 ntBASIC3.83□□□□□ -1.8
HDAC4P56524 SNORA57.3-201ENST00000411095 141 ntBASIC3.83□□□□□ -1.8
HDAC4P56524 RPL17P12-201ENST00000413391 526 ntBASIC3.83□□□□□ -1.8
HDAC4P56524 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC3.83□□□□□ -1.8
HDAC4P56524 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC3.83□□□□□ -1.8
HDAC4P56524 USP9YP14-201ENST00000430663 563 ntBASIC3.83□□□□□ -1.8
HDAC4P56524 SKP1P1-201ENST00000438081 489 ntBASIC3.83□□□□□ -1.8
HDAC4P56524 HMGB1P12-201ENST00000438594 598 ntBASIC3.83□□□□□ -1.8
HDAC4P56524 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC3.83□□□□□ -1.8
HDAC4P56524 AL022238.1-201ENST00000442557 355 ntBASIC3.83□□□□□ -1.8
HDAC4P56524 AL353691.1-201ENST00000451332 387 ntBASIC3.83□□□□□ -1.8
HDAC4P56524 snoU13.4-201ENST00000458916 104 ntBASIC3.83□□□□□ -1.8
HDAC4P56524 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC3.83□□□□□ -1.8
HDAC4P56524 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC3.83□□□□□ -1.8
HDAC4P56524 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC3.83□□□□□ -1.8
HDAC4P56524 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC3.83□□□□□ -1.8
HDAC4P56524 AC093331.1-201ENST00000521474 169 ntBASIC3.83□□□□□ -1.8
HDAC4P56524 AC008489.1-201ENST00000524271 483 ntBASIC3.83□□□□□ -1.8
HDAC4P56524 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC3.83□□□□□ -1.8
HDAC4P56524 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC3.83□□□□□ -1.8
HDAC4P56524 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.83□□□□□ -1.8
HDAC4P56524 AC069200.1-201ENST00000609511 323 ntBASIC3.83□□□□□ -1.8
HDAC4P56524 AP000254.1-201ENST00000609934 520 ntBASIC3.83□□□□□ -1.8
HDAC4P56524 AC122108.2-201ENST00000611946 526 ntBASIC3.83□□□□□ -1.8
HDAC4P56524 AC005858.4-201ENST00000623191 700 ntBASIC3.83□□□□□ -1.8
HDAC4P56524 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC3.83□□□□□ -1.8
HDAC4P56524 AC093591.3-201ENST00000634516 308 ntBASIC3.83□□□□□ -1.8
HDAC4P56524 AC032011.1-201ENST00000611703 1549 ntBASIC3.83□□□□□ -1.8
HDAC4P56524 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
HDAC4P56524 AC116096.1-201ENST00000566804 2314 ntBASIC3.83□□□□□ -1.8
HDAC4P56524 MFSD8-236ENST00000641509 4050 ntBASIC3.83□□□□□ -1.8
HDAC4P56524 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HDAC4P56524 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.82□□□□□ -1.8
HDAC4P56524 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HDAC4P56524 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HDAC4P56524 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.82□□□□□ -1.8
HDAC4P56524 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HDAC4P56524 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HDAC4P56524 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.82□□□□□ -1.8
HDAC4P56524 CCT4P2-201ENST00000233836 1548 ntBASIC3.82□□□□□ -1.8
HDAC4P56524 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HDAC4P56524 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HDAC4P56524 RNU6-853P-201ENST00000364306 107 ntBASIC3.82□□□□□ -1.8
HDAC4P56524 RNU6-359P-201ENST00000365466 108 ntBASIC3.82□□□□□ -1.8
HDAC4P56524 RNU6-1207P-201ENST00000384343 107 ntBASIC3.82□□□□□ -1.8
HDAC4P56524 RNU6-348P-201ENST00000384386 107 ntBASIC3.82□□□□□ -1.8
HDAC4P56524 RNU6-297P-201ENST00000384636 107 ntBASIC3.82□□□□□ -1.8
HDAC4P56524 AC092447.6-201ENST00000414578 210 ntBASIC3.82□□□□□ -1.8
HDAC4P56524 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.82□□□□□ -1.8
HDAC4P56524 B3GALNT1P1-201ENST00000420569 975 ntBASIC3.82□□□□□ -1.8
HDAC4P56524 AL356583.2-201ENST00000426536 280 ntBASIC3.82□□□□□ -1.8
HDAC4P56524 AL445584.1-201ENST00000431451 330 ntBASIC3.82□□□□□ -1.8
HDAC4P56524 AC092473.1-201ENST00000441098 221 ntBASIC3.82□□□□□ -1.8
HDAC4P56524 RPL7P36-201ENST00000444633 681 ntBASIC3.82□□□□□ -1.8
HDAC4P56524 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC3.82□□□□□ -1.8
HDAC4P56524 AC099563.1-201ENST00000456086 418 ntBASIC3.82□□□□□ -1.8
HDAC4P56524 MTCO1P42-201ENST00000457379 726 ntBASIC3.82□□□□□ -1.8
HDAC4P56524 RPL7P49-201ENST00000471402 708 ntBASIC3.82□□□□□ -1.8
HDAC4P56524 AC026784.1-201ENST00000507986 352 ntBASIC3.82□□□□□ -1.8
HDAC4P56524 AF131216.2-201ENST00000512316 564 ntBASIC3.82□□□□□ -1.8
HDAC4P56524 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HDAC4P56524 RN7SKP289-201ENST00000517244 295 ntBASIC3.82□□□□□ -1.8
HDAC4P56524 AC022880.1-201ENST00000534017 973 ntBASIC3.82□□□□□ -1.8
HDAC4P56524 AC087481.2-201ENST00000565492 330 ntBASIC3.82□□□□□ -1.8
HDAC4P56524 KLKP1-201ENST00000595979 403 ntBASIC3.82□□□□□ -1.8
HDAC4P56524 AC068790.2-201ENST00000602601 557 ntBASIC3.82□□□□□ -1.8
HDAC4P56524 AC084757.4-201ENST00000616350 526 ntBASIC3.82□□□□□ -1.8
HDAC4P56524 CR392039.5-201ENST00000623201 510 ntBASIC3.82□□□□□ -1.8
HDAC4P56524 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HDAC4P56524 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HDAC4P56524 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.82□□□□□ -1.8
HDAC4P56524 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HDAC4P56524 CEP170P1-201ENST00000502249 4587 ntBASIC3.82□□□□□ -1.8
HDAC4P56524 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.81□□□□□ -1.8
HDAC4P56524 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
HDAC4P56524 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
HDAC4P56524 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC3.81□□□□□ -1.8
HDAC4P56524 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
HDAC4P56524 RNY4P24-201ENST00000362735 96 ntBASIC3.81□□□□□ -1.8
HDAC4P56524 SNORD3H-201ENST00000384486 214 ntBASIC3.81□□□□□ -1.8
HDAC4P56524 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC3.81□□□□□ -1.8
HDAC4P56524 AC069157.1-201ENST00000421749 137 ntBASIC3.81□□□□□ -1.8
HDAC4P56524 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC3.81□□□□□ -1.8
HDAC4P56524 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC3.81□□□□□ -1.8
HDAC4P56524 MTND4LP10-201ENST00000435146 291 ntBASIC3.81□□□□□ -1.8
HDAC4P56524 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC3.81□□□□□ -1.8
HDAC4P56524 NOTCH2P1-201ENST00000443481 624 ntBASIC3.81□□□□□ -1.8
HDAC4P56524 Z82190.1-201ENST00000454534 490 ntBASIC3.81□□□□□ -1.8
HDAC4P56524 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms