Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC007496.3-201ENST00000624987 3443 ntBASIC3.07□□□□□ -1.92
CDX1P47902 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
CDX1P47902 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
CDX1P47902 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
CDX1P47902 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
CDX1P47902 AL513302.2-201ENST00000562313 1842 ntBASIC3.07□□□□□ -1.92
CDX1P47902 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.07□□□□□ -1.92
CDX1P47902 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.07□□□□□ -1.92
CDX1P47902 SNORA73.2-201ENST00000364946 201 ntBASIC3.07□□□□□ -1.92
CDX1P47902 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC3.07□□□□□ -1.92
CDX1P47902 RNU6-533P-201ENST00000384144 107 ntBASIC3.07□□□□□ -1.92
CDX1P47902 HLFP1-201ENST00000402375 499 ntBASIC3.07□□□□□ -1.92
CDX1P47902 RPS7P13-201ENST00000413955 498 ntBASIC3.07□□□□□ -1.92
CDX1P47902 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.07□□□□□ -1.92
CDX1P47902 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC3.07□□□□□ -1.92
CDX1P47902 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC3.07□□□□□ -1.92
CDX1P47902 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC3.07□□□□□ -1.92
CDX1P47902 AL445567.1-201ENST00000439121 144 ntBASIC3.07□□□□□ -1.92
CDX1P47902 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC3.07□□□□□ -1.92
CDX1P47902 UBE2D3P4-201ENST00000441973 436 ntBASIC3.07□□□□□ -1.92
CDX1P47902 MTCO3P45-201ENST00000443036 613 ntBASIC3.07□□□□□ -1.92
CDX1P47902 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC3.07□□□□□ -1.92
CDX1P47902 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC3.07□□□□□ -1.92
CDX1P47902 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC3.07□□□□□ -1.92
CDX1P47902 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3.07□□□□□ -1.92
CDX1P47902 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC3.07□□□□□ -1.92
CDX1P47902 AC008481.1-201ENST00000463278 396 ntBASIC3.07□□□□□ -1.92
CDX1P47902 AC010401.1-201ENST00000463867 348 ntBASIC3.07□□□□□ -1.92
CDX1P47902 AC084357.1-201ENST00000473404 255 ntBASIC3.07□□□□□ -1.92
CDX1P47902 RN7SL442P-201ENST00000473804 320 ntBASIC3.07□□□□□ -1.92
CDX1P47902 AC112204.1-201ENST00000502591 103 ntBASIC3.07□□□□□ -1.92
CDX1P47902 CDC42P4-201ENST00000510507 563 ntBASIC3.07□□□□□ -1.92
CDX1P47902 IGHV3-76-201ENST00000522465 295 ntBASIC3.07□□□□□ -1.92
CDX1P47902 MTCO1P49-201ENST00000523429 802 ntBASIC3.07□□□□□ -1.92
CDX1P47902 CASP1P1-201ENST00000526345 212 ntBASIC3.07□□□□□ -1.92
CDX1P47902 AC007834.2-201ENST00000536310 343 ntBASIC3.07□□□□□ -1.92
CDX1P47902 AC123904.3-201ENST00000547218 814 ntBASIC3.07□□□□□ -1.92
CDX1P47902 AC124947.2-202ENST00000552735 133 ntBASIC3.07□□□□□ -1.92
CDX1P47902 AC005951.2-201ENST00000576282 495 ntBASIC3.07□□□□□ -1.92
CDX1P47902 RN7SL703P-201ENST00000578485 302 ntBASIC3.07□□□□□ -1.92
CDX1P47902 MIR5685-201ENST00000579080 79 ntBASIC3.07□□□□□ -1.92
CDX1P47902 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC3.07□□□□□ -1.92
CDX1P47902 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC3.07□□□□□ -1.92
CDX1P47902 AC091167.4-201ENST00000605079 184 ntBASIC3.07□□□□□ -1.92
CDX1P47902 AC105129.3-201ENST00000605455 485 ntBASIC3.07□□□□□ -1.92
CDX1P47902 AC107294.3-201ENST00000609211 526 ntBASIC3.07□□□□□ -1.92
CDX1P47902 SDR42E1P2-201ENST00000614861 481 ntBASIC3.07□□□□□ -1.92
CDX1P47902 AC090132.2-201ENST00000615881 347 ntBASIC3.07□□□□□ -1.92
CDX1P47902 AL354798.1-201ENST00000622505 329 ntBASIC3.07□□□□□ -1.92
CDX1P47902 AC027309.3-201ENST00000623419 351 ntBASIC3.07□□□□□ -1.92
CDX1P47902 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC3.07□□□□□ -1.92
CDX1P47902 AC097655.1-201ENST00000635075 318 ntBASIC3.07□□□□□ -1.92
CDX1P47902 AC010149.2-201ENST00000637608 315 ntBASIC3.07□□□□□ -1.92
CDX1P47902 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.07□□□□□ -1.92
CDX1P47902 AC010733.2-201ENST00000589496 5702 ntBASIC3.07□□□□□ -1.92
CDX1P47902 ATP8A2P3-201ENST00000426792 1536 ntBASIC3.07□□□□□ -1.92
CDX1P47902 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
CDX1P47902 FAM35BP-202ENST00000497389 3337 ntBASIC3.07□□□□□ -1.92
CDX1P47902 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.07□□□□□ -1.92
CDX1P47902 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.07□□□□□ -1.92
CDX1P47902 PAPPA-AS1-201ENST00000445861 2450 ntBASIC3.07□□□□□ -1.92
CDX1P47902 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.06□□□□□ -1.92
CDX1P47902 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
CDX1P47902 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
CDX1P47902 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
CDX1P47902 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
CDX1P47902 TPTE2P4-201ENST00000258589 1605 ntBASIC3.06□□□□□ -1.92
CDX1P47902 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
CDX1P47902 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC3.06□□□□□ -1.92
CDX1P47902 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
CDX1P47902 RNA5SP399-201ENST00000364003 117 ntBASIC3.06□□□□□ -1.92
CDX1P47902 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC3.06□□□□□ -1.92
CDX1P47902 RNY3P9-201ENST00000384727 106 ntBASIC3.06□□□□□ -1.92
CDX1P47902 SNORA3.3-201ENST00000408712 125 ntBASIC3.06□□□□□ -1.92
CDX1P47902 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
CDX1P47902 RNU6-1077P-201ENST00000410506 102 ntBASIC3.06□□□□□ -1.92
CDX1P47902 RN7SKP140-201ENST00000411196 284 ntBASIC3.06□□□□□ -1.92
CDX1P47902 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC3.06□□□□□ -1.92
CDX1P47902 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC3.06□□□□□ -1.92
CDX1P47902 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
CDX1P47902 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.06□□□□□ -1.92
CDX1P47902 TBCAP1-201ENST00000436520 327 ntBASIC3.06□□□□□ -1.92
CDX1P47902 HIGD1AP11-201ENST00000438361 280 ntBASIC3.06□□□□□ -1.92
CDX1P47902 AC122718.1-201ENST00000439448 744 ntBASIC3.06□□□□□ -1.92
CDX1P47902 RPS29P7-201ENST00000439662 171 ntBASIC3.06□□□□□ -1.92
CDX1P47902 AL049734.2-201ENST00000441066 616 ntBASIC3.06□□□□□ -1.92
CDX1P47902 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
CDX1P47902 EPS15P1-201ENST00000448836 336 ntBASIC3.06□□□□□ -1.92
CDX1P47902 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.06□□□□□ -1.92
CDX1P47902 AL590365.1-201ENST00000450788 243 ntBASIC3.06□□□□□ -1.92
CDX1P47902 AC097262.1-201ENST00000452559 548 ntBASIC3.06□□□□□ -1.92
CDX1P47902 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.06□□□□□ -1.92
CDX1P47902 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC3.06□□□□□ -1.92
CDX1P47902 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC3.06□□□□□ -1.92
CDX1P47902 AC108059.3-201ENST00000456388 214 ntBASIC3.06□□□□□ -1.92
CDX1P47902 RPL7P15-201ENST00000461190 712 ntBASIC3.06□□□□□ -1.92
CDX1P47902 FAM133DP-201ENST00000464802 691 ntBASIC3.06□□□□□ -1.92
CDX1P47902 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
CDX1P47902 AP000797.1-201ENST00000478870 387 ntBASIC3.06□□□□□ -1.92
CDX1P47902 RPL30P5-201ENST00000494923 336 ntBASIC3.06□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 93.5 ms