Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 CRYM-AS1-204ENST00000637983 556 ntBASIC2.47□□□□□ -2.01
USF1P22415 MIR1322-201ENST00000638013 71 ntBASIC2.47□□□□□ -2.01
USF1P22415 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.47□□□□□ -2.01
USF1P22415 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
USF1P22415 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
USF1P22415 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC2.46□□□□□ -2.01
USF1P22415 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.46□□□□□ -2.02
USF1P22415 FRG1BP-201ENST00000278882 761 ntBASIC2.46□□□□□ -2.02
USF1P22415 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC2.46□□□□□ -2.02
USF1P22415 SNORA9.2-201ENST00000365361 133 ntBASIC2.46□□□□□ -2.02
USF1P22415 MIR1290-201ENST00000408735 78 ntBASIC2.46□□□□□ -2.02
USF1P22415 MTATP6P27-201ENST00000416987 621 ntBASIC2.46□□□□□ -2.02
USF1P22415 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
USF1P22415 C1DP1-201ENST00000426049 402 ntBASIC2.46□□□□□ -2.02
USF1P22415 AC087499.2-201ENST00000432861 149 ntBASIC2.46□□□□□ -2.02
USF1P22415 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC2.46□□□□□ -2.02
USF1P22415 GTF2IP7-202ENST00000436677 309 ntBASIC2.46□□□□□ -2.02
USF1P22415 USP9YP22-201ENST00000438971 294 ntBASIC2.46□□□□□ -2.02
USF1P22415 AC005297.2-201ENST00000450430 606 ntBASIC2.46□□□□□ -2.02
USF1P22415 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC2.46□□□□□ -2.02
USF1P22415 AC023424.2-201ENST00000493479 777 ntBASIC2.46□□□□□ -2.02
USF1P22415 AC090453.1-201ENST00000495560 436 ntBASIC2.46□□□□□ -2.02
USF1P22415 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC2.46□□□□□ -2.02
USF1P22415 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC2.46□□□□□ -2.02
USF1P22415 AC113420.1-201ENST00000507903 571 ntBASIC2.46□□□□□ -2.02
USF1P22415 HIGD1AP13-201ENST00000509878 289 ntBASIC2.46□□□□□ -2.02
USF1P22415 AC022483.1-201ENST00000514020 567 ntBASIC2.46□□□□□ -2.02
USF1P22415 RNU6-1028P-201ENST00000517164 93 ntBASIC2.46□□□□□ -2.02
USF1P22415 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC2.46□□□□□ -2.02
USF1P22415 AC087808.1-201ENST00000520501 361 ntBASIC2.46□□□□□ -2.02
USF1P22415 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC2.46□□□□□ -2.02
USF1P22415 HSPE1P20-201ENST00000538133 289 ntBASIC2.46□□□□□ -2.02
USF1P22415 OR7K1P-201ENST00000546439 926 ntBASIC2.46□□□□□ -2.02
USF1P22415 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC2.46□□□□□ -2.02
USF1P22415 MIR4319-201ENST00000577285 85 ntBASIC2.46□□□□□ -2.02
USF1P22415 MTCO3P13-201ENST00000577757 781 ntBASIC2.46□□□□□ -2.02
USF1P22415 OR4K8P-201ENST00000578842 1048 ntBASIC2.46□□□□□ -2.02
USF1P22415 AC126365.2-201ENST00000580630 379 ntBASIC2.46□□□□□ -2.02
USF1P22415 MIR3609-201ENST00000582661 80 ntBASIC2.46□□□□□ -2.02
USF1P22415 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC2.46□□□□□ -2.02
USF1P22415 AC105224.1-201ENST00000587055 421 ntBASIC2.46□□□□□ -2.02
USF1P22415 ATP1B3P1-201ENST00000605365 821 ntBASIC2.46□□□□□ -2.02
USF1P22415 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC2.46□□□□□ -2.02
USF1P22415 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC2.46□□□□□ -2.02
USF1P22415 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC2.46□□□□□ -2.02
USF1P22415 AC120349.2-201ENST00000625002 298 ntBASIC2.46□□□□□ -2.02
USF1P22415 AP003485.1-201ENST00000625093 753 ntBASIC2.46□□□□□ -2.02
USF1P22415 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.46□□□□□ -2.02
USF1P22415 IL33-203ENST00000456383 2501 ntTSL 5 BASIC2.46□□□□□ -2.02
USF1P22415 AC096644.4-201ENST00000563417 2912 ntBASIC2.46□□□□□ -2.02
USF1P22415 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.46□□□□□ -2.02
USF1P22415 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.45□□□□□ -2.02
USF1P22415 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
USF1P22415 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.45□□□□□ -2.02
USF1P22415 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.45□□□□□ -2.02
USF1P22415 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
USF1P22415 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.45□□□□□ -2.02
USF1P22415 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.45□□□□□ -2.02
USF1P22415 VTRNA1-1-201ENST00000363120 99 ntBASIC2.45□□□□□ -2.02
USF1P22415 RNA5SP139-201ENST00000364340 117 ntBASIC2.45□□□□□ -2.02
USF1P22415 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
USF1P22415 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC2.45□□□□□ -2.02
USF1P22415 RNU6-1197P-201ENST00000391183 107 ntBASIC2.45□□□□□ -2.02
USF1P22415 AL450338.1-201ENST00000407987 512 ntBASIC2.45□□□□□ -2.02
USF1P22415 RNA5SP492-201ENST00000411330 114 ntBASIC2.45□□□□□ -2.02
USF1P22415 AL592310.1-201ENST00000414330 671 ntBASIC2.45□□□□□ -2.02
USF1P22415 USP9YP21-201ENST00000420603 432 ntBASIC2.45□□□□□ -2.02
USF1P22415 AL139413.1-201ENST00000421309 217 ntBASIC2.45□□□□□ -2.02
USF1P22415 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC2.45□□□□□ -2.02
USF1P22415 AC063976.3-201ENST00000426849 329 ntBASIC2.45□□□□□ -2.02
USF1P22415 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC2.45□□□□□ -2.02
USF1P22415 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC2.45□□□□□ -2.02
USF1P22415 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC2.45□□□□□ -2.02
USF1P22415 SNRPGP6-201ENST00000451124 220 ntBASIC2.45□□□□□ -2.02
USF1P22415 MTCO3P11-201ENST00000455103 774 ntBASIC2.45□□□□□ -2.02
USF1P22415 RPS29P12-201ENST00000460178 152 ntBASIC2.45□□□□□ -2.02
USF1P22415 AL049714.1-201ENST00000466686 347 ntBASIC2.45□□□□□ -2.02
USF1P22415 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
USF1P22415 RPL31P60-201ENST00000478450 367 ntBASIC2.45□□□□□ -2.02
USF1P22415 RN7SL20P-201ENST00000488827 297 ntBASIC2.45□□□□□ -2.02
USF1P22415 AC016550.1-201ENST00000505348 785 ntBASIC2.45□□□□□ -2.02
USF1P22415 OR5G4P-201ENST00000525251 760 ntBASIC2.45□□□□□ -2.02
USF1P22415 AP000867.2-201ENST00000532468 320 ntBASIC2.45□□□□□ -2.02
USF1P22415 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC2.45□□□□□ -2.02
USF1P22415 AC125611.2-201ENST00000551907 647 ntBASIC2.45□□□□□ -2.02
USF1P22415 AADACP1-206ENST00000561502 1193 ntBASIC2.45□□□□□ -2.02
USF1P22415 AC012119.1-201ENST00000603184 222 ntBASIC2.45□□□□□ -2.02
USF1P22415 AL035413.2-201ENST00000604801 525 ntBASIC2.45□□□□□ -2.02
USF1P22415 AL359198.2-201ENST00000611836 194 ntBASIC2.45□□□□□ -2.02
USF1P22415 AL512427.1-201ENST00000618593 349 ntBASIC2.45□□□□□ -2.02
USF1P22415 AC007275.1-201ENST00000621243 671 ntBASIC2.45□□□□□ -2.02
USF1P22415 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC2.45□□□□□ -2.02
USF1P22415 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC2.45□□□□□ -2.02
USF1P22415 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
USF1P22415 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.45□□□□□ -2.02
USF1P22415 AP005901.5-201ENST00000545779 1796 ntBASIC2.44□□□□□ -2.02
USF1P22415 AP003122.5-201ENST00000527668 3766 ntBASIC2.44□□□□□ -2.02
USF1P22415 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC2.44□□□□□ -2.02
USF1P22415 TPTE2P4-201ENST00000258589 1605 ntBASIC2.44□□□□□ -2.02
USF1P22415 SNORD56.5-201ENST00000364281 72 ntBASIC2.44□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 176.8 ms