Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC010625.1-201ENST00000511296 403 ntBASIC3.45□□□□□ -1.86
MSH3P20585 FABP5P5-201ENST00000515537 406 ntBASIC3.45□□□□□ -1.86
MSH3P20585 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC3.45□□□□□ -1.86
MSH3P20585 AP002748.2-201ENST00000528671 348 ntBASIC3.45□□□□□ -1.86
MSH3P20585 AC024224.1-201ENST00000538284 609 ntBASIC3.45□□□□□ -1.86
MSH3P20585 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.45□□□□□ -1.86
MSH3P20585 AC026333.2-201ENST00000542164 106 ntBASIC3.45□□□□□ -1.86
MSH3P20585 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC3.45□□□□□ -1.86
MSH3P20585 AGGF1P4-201ENST00000568249 801 ntBASIC3.45□□□□□ -1.86
MSH3P20585 MIR5697-201ENST00000578045 78 ntBASIC3.45□□□□□ -1.86
MSH3P20585 SNRPGP15-201ENST00000600149 222 ntBASIC3.45□□□□□ -1.86
MSH3P20585 AL355812.1-201ENST00000603215 216 ntBASIC3.45□□□□□ -1.86
MSH3P20585 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.45□□□□□ -1.86
MSH3P20585 IGHV3-29-201ENST00000604817 344 ntBASIC3.45□□□□□ -1.86
MSH3P20585 AC090425.2-201ENST00000608818 501 ntBASIC3.45□□□□□ -1.86
MSH3P20585 AC100793.4-201ENST00000613683 429 ntBASIC3.45□□□□□ -1.86
MSH3P20585 AC112200.1-201ENST00000625015 234 ntBASIC3.45□□□□□ -1.86
MSH3P20585 AL392088.2-201ENST00000637607 285 ntBASIC3.45□□□□□ -1.86
MSH3P20585 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.45□□□□□ -1.86
MSH3P20585 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.45□□□□□ -1.86
MSH3P20585 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
MSH3P20585 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC3.44□□□□□ -1.86
MSH3P20585 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC3.44□□□□□ -1.86
MSH3P20585 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
MSH3P20585 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
MSH3P20585 AL049780.3-201ENST00000624612 1583 ntBASIC3.44□□□□□ -1.86
MSH3P20585 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.44□□□□□ -1.86
MSH3P20585 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.44□□□□□ -1.86
MSH3P20585 THUMPD3P1-201ENST00000506556 1480 ntBASIC3.44□□□□□ -1.86
MSH3P20585 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.44□□□□□ -1.86
MSH3P20585 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
MSH3P20585 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC3.44□□□□□ -1.86
MSH3P20585 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
MSH3P20585 AL161781.1-201ENST00000354277 403 ntBASIC3.44□□□□□ -1.86
MSH3P20585 RNU6-989P-201ENST00000362756 107 ntBASIC3.44□□□□□ -1.86
MSH3P20585 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
MSH3P20585 RNU6-761P-201ENST00000384148 107 ntBASIC3.44□□□□□ -1.86
MSH3P20585 Y_RNA.493-201ENST00000384422 102 ntBASIC3.44□□□□□ -1.86
MSH3P20585 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.44□□□□□ -1.86
MSH3P20585 HSPE1P26-201ENST00000405341 275 ntBASIC3.44□□□□□ -1.86
MSH3P20585 RNA5SP56-201ENST00000410277 118 ntBASIC3.44□□□□□ -1.86
MSH3P20585 RNU2-15P-201ENST00000410692 191 ntBASIC3.44□□□□□ -1.86
MSH3P20585 RNU6-55P-201ENST00000411092 107 ntBASIC3.44□□□□□ -1.86
MSH3P20585 RNU6-954P-201ENST00000411355 107 ntBASIC3.44□□□□□ -1.86
MSH3P20585 MTCO3P41-201ENST00000414801 328 ntBASIC3.44□□□□□ -1.86
MSH3P20585 AL513174.1-201ENST00000423182 629 ntBASIC3.44□□□□□ -1.86
MSH3P20585 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC3.44□□□□□ -1.86
MSH3P20585 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC3.44□□□□□ -1.86
MSH3P20585 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC3.44□□□□□ -1.86
MSH3P20585 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC3.44□□□□□ -1.86
MSH3P20585 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC3.44□□□□□ -1.86
MSH3P20585 RPL7P36-201ENST00000444633 681 ntBASIC3.44□□□□□ -1.86
MSH3P20585 AL357552.1-201ENST00000445254 415 ntBASIC3.44□□□□□ -1.86
MSH3P20585 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC3.44□□□□□ -1.86
MSH3P20585 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC3.44□□□□□ -1.86
MSH3P20585 snoU13.3-201ENST00000459441 104 ntBASIC3.44□□□□□ -1.86
MSH3P20585 AC023424.2-201ENST00000493479 777 ntBASIC3.44□□□□□ -1.86
MSH3P20585 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC3.44□□□□□ -1.86
MSH3P20585 ARL2BPP4-201ENST00000506854 471 ntBASIC3.44□□□□□ -1.86
MSH3P20585 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC3.44□□□□□ -1.86
MSH3P20585 AF131216.2-201ENST00000512316 564 ntBASIC3.44□□□□□ -1.86
MSH3P20585 RN7SKP116-201ENST00000516902 319 ntBASIC3.44□□□□□ -1.86
MSH3P20585 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC3.44□□□□□ -1.86
MSH3P20585 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.44□□□□□ -1.86
MSH3P20585 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC3.44□□□□□ -1.86
MSH3P20585 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC3.44□□□□□ -1.86
MSH3P20585 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.44□□□□□ -1.86
MSH3P20585 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.44□□□□□ -1.86
MSH3P20585 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC3.44□□□□□ -1.86
MSH3P20585 MIR4429-201ENST00000580105 73 ntBASIC3.44□□□□□ -1.86
MSH3P20585 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC3.44□□□□□ -1.86
MSH3P20585 MIR3922-201ENST00000585192 84 ntBASIC3.44□□□□□ -1.86
MSH3P20585 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC3.44□□□□□ -1.86
MSH3P20585 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
MSH3P20585 AC092354.2-201ENST00000607786 514 ntBASIC3.44□□□□□ -1.86
MSH3P20585 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
MSH3P20585 AC104010.1-201ENST00000616889 150 ntBASIC3.44□□□□□ -1.86
MSH3P20585 AC091925.2-201ENST00000625059 256 ntBASIC3.44□□□□□ -1.86
MSH3P20585 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC3.44□□□□□ -1.86
MSH3P20585 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC3.44□□□□□ -1.86
MSH3P20585 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.44□□□□□ -1.86
MSH3P20585 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
MSH3P20585 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.44□□□□□ -1.86
MSH3P20585 RNU6-263P-201ENST00000363811 107 ntBASIC3.43□□□□□ -1.86
MSH3P20585 Y_RNA.359-201ENST00000365498 102 ntBASIC3.43□□□□□ -1.86
MSH3P20585 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC3.43□□□□□ -1.86
MSH3P20585 MIR670-201ENST00000390142 98 ntBASIC3.43□□□□□ -1.86
MSH3P20585 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.43□□□□□ -1.86
MSH3P20585 AL663109.1-201ENST00000411498 844 ntBASIC3.43□□□□□ -1.86
MSH3P20585 EI24P1-201ENST00000416584 867 ntBASIC3.43□□□□□ -1.86
MSH3P20585 RPL21P32-201ENST00000419877 477 ntBASIC3.43□□□□□ -1.86
MSH3P20585 ATP5JP1-201ENST00000431631 322 ntBASIC3.43□□□□□ -1.86
MSH3P20585 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC3.43□□□□□ -1.86
MSH3P20585 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC3.43□□□□□ -1.86
MSH3P20585 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.43□□□□□ -1.86
MSH3P20585 AC091862.1-201ENST00000438016 1100 ntBASIC3.43□□□□□ -1.86
MSH3P20585 CYCSP43-201ENST00000438233 310 ntBASIC3.43□□□□□ -1.86
MSH3P20585 MRPS31P2-201ENST00000451581 518 ntBASIC3.43□□□□□ -1.86
MSH3P20585 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
MSH3P20585 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.43□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms