Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 UBE2D3P2-201ENST00000424409 445 ntBASIC2.86□□□□□ -1.95
SDC1P18827 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.86□□□□□ -1.95
SDC1P18827 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC2.86□□□□□ -1.95
SDC1P18827 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC2.86□□□□□ -1.95
SDC1P18827 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC2.86□□□□□ -1.95
SDC1P18827 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC2.86□□□□□ -1.95
SDC1P18827 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC2.86□□□□□ -1.95
SDC1P18827 RPL23AP35-201ENST00000451906 501 ntBASIC2.86□□□□□ -1.95
SDC1P18827 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC2.86□□□□□ -1.95
SDC1P18827 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC2.86□□□□□ -1.95
SDC1P18827 AC012181.1-201ENST00000479895 423 ntBASIC2.86□□□□□ -1.95
SDC1P18827 MTND2P14-201ENST00000482139 351 ntBASIC2.86□□□□□ -1.95
SDC1P18827 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC2.86□□□□□ -1.95
SDC1P18827 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC2.86□□□□□ -1.95
SDC1P18827 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC2.86□□□□□ -1.95
SDC1P18827 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC2.86□□□□□ -1.95
SDC1P18827 AC239860.2-201ENST00000525886 270 ntBASIC2.86□□□□□ -1.95
SDC1P18827 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC2.86□□□□□ -1.95
SDC1P18827 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC2.86□□□□□ -1.95
SDC1P18827 AL031985.2-201ENST00000600955 480 ntBASIC2.86□□□□□ -1.95
SDC1P18827 AC024560.3-201ENST00000608482 349 ntBASIC2.86□□□□□ -1.95
SDC1P18827 AC019176.2-201ENST00000611579 315 ntBASIC2.86□□□□□ -1.95
SDC1P18827 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC2.86□□□□□ -1.95
SDC1P18827 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC2.86□□□□□ -1.95
SDC1P18827 AL607023.1-201ENST00000620045 248 ntBASIC2.86□□□□□ -1.95
SDC1P18827 AC002550.2-201ENST00000621246 394 ntBASIC2.86□□□□□ -1.95
SDC1P18827 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC2.86□□□□□ -1.95
SDC1P18827 AC026422.1-201ENST00000623961 452 ntBASIC2.86□□□□□ -1.95
SDC1P18827 AC103706.2-201ENST00000638080 240 ntBASIC2.86□□□□□ -1.95
SDC1P18827 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
SDC1P18827 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
SDC1P18827 AC009812.4-201ENST00000569134 1805 ntBASIC2.86□□□□□ -1.95
SDC1P18827 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
SDC1P18827 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
SDC1P18827 AP000526.1-201ENST00000603308 1388 ntBASIC2.86□□□□□ -1.95
SDC1P18827 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC2.85□□□□□ -1.95
SDC1P18827 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC2.85□□□□□ -1.95
SDC1P18827 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.85□□□□□ -1.95
SDC1P18827 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
SDC1P18827 THUMPD3P1-201ENST00000506556 1480 ntBASIC2.85□□□□□ -1.95
SDC1P18827 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC2.85□□□□□ -1.95
SDC1P18827 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
SDC1P18827 MIR22-201ENST00000362190 85 ntBASIC2.85□□□□□ -1.95
SDC1P18827 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
SDC1P18827 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC2.85□□□□□ -1.95
SDC1P18827 RN7SKP123-201ENST00000410732 291 ntBASIC2.85□□□□□ -1.95
SDC1P18827 RNA5SP120-201ENST00000410900 112 ntBASIC2.85□□□□□ -1.95
SDC1P18827 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC2.85□□□□□ -1.95
SDC1P18827 AC083875.1-201ENST00000419509 405 ntBASIC2.85□□□□□ -1.95
SDC1P18827 AL022400.1-201ENST00000423946 935 ntBASIC2.85□□□□□ -1.95
SDC1P18827 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC2.85□□□□□ -1.95
SDC1P18827 DPPA2P1-201ENST00000428060 556 ntBASIC2.85□□□□□ -1.95
SDC1P18827 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC2.85□□□□□ -1.95
SDC1P18827 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC2.85□□□□□ -1.95
SDC1P18827 AC104308.1-201ENST00000454621 333 ntBASIC2.85□□□□□ -1.95
SDC1P18827 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC2.85□□□□□ -1.95
SDC1P18827 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC2.85□□□□□ -1.95
SDC1P18827 ARPC3P2-201ENST00000457786 533 ntBASIC2.85□□□□□ -1.95
SDC1P18827 RN7SL601P-201ENST00000471221 293 ntBASIC2.85□□□□□ -1.95
SDC1P18827 AC117440.1-201ENST00000474107 571 ntBASIC2.85□□□□□ -1.95
SDC1P18827 AC104563.1-201ENST00000476147 376 ntBASIC2.85□□□□□ -1.95
SDC1P18827 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
SDC1P18827 AC104685.1-201ENST00000502445 371 ntBASIC2.85□□□□□ -1.95
SDC1P18827 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC2.85□□□□□ -1.95
SDC1P18827 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC2.85□□□□□ -1.95
SDC1P18827 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC2.85□□□□□ -1.95
SDC1P18827 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC2.85□□□□□ -1.95
SDC1P18827 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC2.85□□□□□ -1.95
SDC1P18827 AP003497.1-201ENST00000528472 562 ntBASIC2.85□□□□□ -1.95
SDC1P18827 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC2.85□□□□□ -1.95
SDC1P18827 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
SDC1P18827 AL163153.1-201ENST00000554223 283 ntBASIC2.85□□□□□ -1.95
SDC1P18827 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC2.85□□□□□ -1.95
SDC1P18827 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC2.85□□□□□ -1.95
SDC1P18827 AC106900.2-201ENST00000604994 317 ntBASIC2.85□□□□□ -1.95
SDC1P18827 AC026790.2-201ENST00000606282 430 ntBASIC2.85□□□□□ -1.95
SDC1P18827 AC106028.5-201ENST00000610332 395 ntBASIC2.85□□□□□ -1.95
SDC1P18827 AC021755.4-201ENST00000616620 456 ntBASIC2.85□□□□□ -1.95
SDC1P18827 AL356596.1-201ENST00000624230 379 ntBASIC2.85□□□□□ -1.95
SDC1P18827 AC007490.1-201ENST00000624321 703 ntBASIC2.85□□□□□ -1.95
SDC1P18827 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC2.85□□□□□ -1.95
SDC1P18827 ABBA01000935.2-201ENST00000637477 838 ntBASIC2.85□□□□□ -1.95
SDC1P18827 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
SDC1P18827 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
SDC1P18827 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
SDC1P18827 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
SDC1P18827 AL391994.1-201ENST00000254724 282 ntBASIC2.84□□□□□ -1.95
SDC1P18827 RPL21P132-201ENST00000331267 462 ntBASIC2.84□□□□□ -1.95
SDC1P18827 SNORA63.1-201ENST00000362493 131 ntBASIC2.84□□□□□ -1.95
SDC1P18827 SNORA71.3-201ENST00000362582 128 ntBASIC2.84□□□□□ -1.95
SDC1P18827 SNORA51.4-201ENST00000364993 124 ntBASIC2.84□□□□□ -1.95
SDC1P18827 RNU6-359P-201ENST00000365466 108 ntBASIC2.84□□□□□ -1.95
SDC1P18827 RNU6-1200P-201ENST00000384162 107 ntBASIC2.84□□□□□ -1.95
SDC1P18827 AL356421.1-201ENST00000403255 413 ntBASIC2.84□□□□□ -1.95
SDC1P18827 U3.42-201ENST00000408746 214 ntBASIC2.84□□□□□ -1.95
SDC1P18827 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC2.84□□□□□ -1.95
SDC1P18827 MTATP6P4-201ENST00000427725 675 ntBASIC2.84□□□□□ -1.95
SDC1P18827 OR4K11P-201ENST00000431829 904 ntBASIC2.84□□□□□ -1.95
SDC1P18827 AC024082.2-201ENST00000434771 238 ntBASIC2.84□□□□□ -1.95
SDC1P18827 RSU1P2-202ENST00000437884 485 ntBASIC2.84□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms