Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AC044913.1-201ENST00000557200 430 ntBASIC2.83□□□□□ -1.96
HOXC4P09017 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC2.83□□□□□ -1.96
HOXC4P09017 AP005136.1-201ENST00000579765 429 ntBASIC2.83□□□□□ -1.96
HOXC4P09017 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC2.83□□□□□ -1.96
HOXC4P09017 AC010620.1-201ENST00000601088 1102 ntBASIC2.83□□□□□ -1.96
HOXC4P09017 AL109653.1-201ENST00000603091 248 ntBASIC2.83□□□□□ -1.96
HOXC4P09017 AL133507.1-201ENST00000605269 557 ntBASIC2.83□□□□□ -1.96
HOXC4P09017 AC080013.3-201ENST00000606839 578 ntBASIC2.83□□□□□ -1.96
HOXC4P09017 AC245008.1-201ENST00000608123 476 ntBASIC2.83□□□□□ -1.96
HOXC4P09017 AP005137.2-201ENST00000609238 400 ntBASIC2.83□□□□□ -1.96
HOXC4P09017 AL360219.1-201ENST00000610230 366 ntBASIC2.83□□□□□ -1.96
HOXC4P09017 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC2.83□□□□□ -1.96
HOXC4P09017 AC107075.1-201ENST00000613695 314 ntBASIC2.83□□□□□ -1.96
HOXC4P09017 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
HOXC4P09017 AC073968.1-201ENST00000618594 637 ntBASIC2.83□□□□□ -1.96
HOXC4P09017 AC131159.1-201ENST00000621854 213 ntBASIC2.83□□□□□ -1.96
HOXC4P09017 OR1S1-201ENST00000624470 978 ntBASIC2.83□□□□□ -1.96
HOXC4P09017 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC2.83□□□□□ -1.96
HOXC4P09017 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC2.83□□□□□ -1.96
HOXC4P09017 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.83□□□□□ -1.96
HOXC4P09017 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.83□□□□□ -1.96
HOXC4P09017 AC104454.1-201ENST00000421341 1401 ntBASIC2.83□□□□□ -1.96
HOXC4P09017 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
HOXC4P09017 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
HOXC4P09017 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC2.83□□□□□ -1.96
HOXC4P09017 MTND5P19-201ENST00000424872 1794 ntBASIC2.82□□□□□ -1.96
HOXC4P09017 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
HOXC4P09017 RNU6-989P-201ENST00000362756 107 ntBASIC2.82□□□□□ -1.96
HOXC4P09017 RNU6-1249P-201ENST00000363237 111 ntBASIC2.82□□□□□ -1.96
HOXC4P09017 RNU6-707P-201ENST00000364647 95 ntBASIC2.82□□□□□ -1.96
HOXC4P09017 RNU6-619P-201ENST00000365146 108 ntBASIC2.82□□□□□ -1.96
HOXC4P09017 RNU6-730P-201ENST00000383954 104 ntBASIC2.82□□□□□ -1.96
HOXC4P09017 RNU6-413P-201ENST00000384115 107 ntBASIC2.82□□□□□ -1.96
HOXC4P09017 RSL24D1P4-201ENST00000400938 484 ntBASIC2.82□□□□□ -1.96
HOXC4P09017 MTND4LP20-201ENST00000402379 270 ntBASIC2.82□□□□□ -1.96
HOXC4P09017 AL354719.1-201ENST00000406535 843 ntBASIC2.82□□□□□ -1.96
HOXC4P09017 RAP1BP1-201ENST00000412709 553 ntBASIC2.82□□□□□ -1.96
HOXC4P09017 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC2.82□□□□□ -1.96
HOXC4P09017 FNDC3CP-201ENST00000420795 1155 ntBASIC2.82□□□□□ -1.96
HOXC4P09017 USP9YP26-201ENST00000421008 661 ntBASIC2.82□□□□□ -1.96
HOXC4P09017 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC2.82□□□□□ -1.96
HOXC4P09017 OFD1P12Y-201ENST00000427963 1207 ntBASIC2.82□□□□□ -1.96
HOXC4P09017 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC2.82□□□□□ -1.96
HOXC4P09017 OFD1P13Y-201ENST00000431179 1232 ntBASIC2.82□□□□□ -1.96
HOXC4P09017 VN1R108P-201ENST00000431580 830 ntBASIC2.82□□□□□ -1.96
HOXC4P09017 MTND4P32-201ENST00000437189 1237 ntBASIC2.82□□□□□ -1.96
HOXC4P09017 AL008629.1-201ENST00000438615 184 ntBASIC2.82□□□□□ -1.96
HOXC4P09017 AC092393.1-201ENST00000439625 742 ntBASIC2.82□□□□□ -1.96
HOXC4P09017 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC2.82□□□□□ -1.96
HOXC4P09017 MRPL42P4-201ENST00000453267 443 ntBASIC2.82□□□□□ -1.96
HOXC4P09017 TRBV26-201ENST00000456572 344 ntBASIC2.82□□□□□ -1.96
HOXC4P09017 ATG12P2-201ENST00000456830 416 ntBASIC2.82□□□□□ -1.96
HOXC4P09017 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC2.82□□□□□ -1.96
HOXC4P09017 MTND2P14-201ENST00000482139 351 ntBASIC2.82□□□□□ -1.96
HOXC4P09017 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC2.82□□□□□ -1.96
HOXC4P09017 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC2.82□□□□□ -1.96
HOXC4P09017 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC2.82□□□□□ -1.96
HOXC4P09017 AC021146.8-201ENST00000507455 733 ntBASIC2.82□□□□□ -1.96
HOXC4P09017 AC113347.3-201ENST00000509113 148 ntBASIC2.82□□□□□ -1.96
HOXC4P09017 RNU6-1129P-201ENST00000515964 104 ntBASIC2.82□□□□□ -1.96
HOXC4P09017 SNORA3.4-201ENST00000515969 96 ntBASIC2.82□□□□□ -1.96
HOXC4P09017 AC104986.1-201ENST00000517978 436 ntBASIC2.82□□□□□ -1.96
HOXC4P09017 AC023632.1-201ENST00000518463 375 ntBASIC2.82□□□□□ -1.96
HOXC4P09017 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC2.82□□□□□ -1.96
HOXC4P09017 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC2.82□□□□□ -1.96
HOXC4P09017 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC2.82□□□□□ -1.96
HOXC4P09017 GTF3AP2-201ENST00000557014 266 ntBASIC2.82□□□□□ -1.96
HOXC4P09017 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC2.82□□□□□ -1.96
HOXC4P09017 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC2.82□□□□□ -1.96
HOXC4P09017 AC090695.1-201ENST00000561269 1222 ntBASIC2.82□□□□□ -1.96
HOXC4P09017 AADACP1-206ENST00000561502 1193 ntBASIC2.82□□□□□ -1.96
HOXC4P09017 AL354943.1-201ENST00000572103 781 ntBASIC2.82□□□□□ -1.96
HOXC4P09017 AC138761.3-201ENST00000579993 334 ntBASIC2.82□□□□□ -1.96
HOXC4P09017 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC2.82□□□□□ -1.96
HOXC4P09017 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC2.82□□□□□ -1.96
HOXC4P09017 AC018755.4-201ENST00000619715 454 ntBASIC2.82□□□□□ -1.96
HOXC4P09017 AC010338.1-201ENST00000621823 717 ntBASIC2.82□□□□□ -1.96
HOXC4P09017 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC2.82□□□□□ -1.96
HOXC4P09017 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC2.82□□□□□ -1.96
HOXC4P09017 MIR1322-201ENST00000638013 71 ntBASIC2.82□□□□□ -1.96
HOXC4P09017 MFSD8-245ENST00000641743 948 ntBASIC2.82□□□□□ -1.96
HOXC4P09017 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.82□□□□□ -1.96
HOXC4P09017 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
HOXC4P09017 AC130650.2-201ENST00000618736 2403 ntBASIC2.82□□□□□ -1.96
HOXC4P09017 AC093831.2-201ENST00000624393 3427 ntBASIC2.82□□□□□ -1.96
HOXC4P09017 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC2.82□□□□□ -1.96
HOXC4P09017 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
HOXC4P09017 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.82□□□□□ -1.96
HOXC4P09017 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC2.81□□□□□ -1.96
HOXC4P09017 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
HOXC4P09017 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
HOXC4P09017 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
HOXC4P09017 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
HOXC4P09017 NACA3P-201ENST00000359690 648 ntBASIC2.81□□□□□ -1.96
HOXC4P09017 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC2.81□□□□□ -1.96
HOXC4P09017 AL023807.1-201ENST00000407932 359 ntBASIC2.81□□□□□ -1.96
HOXC4P09017 MIR1289-1-201ENST00000408836 144 ntBASIC2.81□□□□□ -1.96
HOXC4P09017 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
HOXC4P09017 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC2.81□□□□□ -1.96
HOXC4P09017 AC087499.2-201ENST00000432861 149 ntBASIC2.81□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 97.4 ms