Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 RPS26P21-201ENST00000475397 348 ntBASIC3.09□□□□□ -1.91
CLDN3O15551 AC104982.1-201ENST00000478775 574 ntBASIC3.09□□□□□ -1.91
CLDN3O15551 AC147055.4-201ENST00000504399 745 ntBASIC3.09□□□□□ -1.91
CLDN3O15551 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC3.09□□□□□ -1.91
CLDN3O15551 SNORA31.26-201ENST00000517250 137 ntBASIC3.09□□□□□ -1.91
CLDN3O15551 AP000867.2-201ENST00000532468 320 ntBASIC3.09□□□□□ -1.91
CLDN3O15551 HPRT1P3-201ENST00000539521 576 ntBASIC3.09□□□□□ -1.91
CLDN3O15551 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC3.09□□□□□ -1.91
CLDN3O15551 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.09□□□□□ -1.91
CLDN3O15551 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.09□□□□□ -1.91
CLDN3O15551 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC3.09□□□□□ -1.91
CLDN3O15551 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC3.09□□□□□ -1.91
CLDN3O15551 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC3.09□□□□□ -1.91
CLDN3O15551 CYCSP39-201ENST00000565821 309 ntBASIC3.09□□□□□ -1.91
CLDN3O15551 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC3.09□□□□□ -1.91
CLDN3O15551 AC018645.2-201ENST00000609151 472 ntBASIC3.09□□□□□ -1.91
CLDN3O15551 AC090115.4-201ENST00000609970 188 ntBASIC3.09□□□□□ -1.91
CLDN3O15551 MIR7106-201ENST00000612419 65 ntBASIC3.09□□□□□ -1.91
CLDN3O15551 AL590099.1-201ENST00000615276 138 ntBASIC3.09□□□□□ -1.91
CLDN3O15551 AL596245.1-201ENST00000618994 362 ntBASIC3.09□□□□□ -1.91
CLDN3O15551 AC010338.1-201ENST00000621823 717 ntBASIC3.09□□□□□ -1.91
CLDN3O15551 AC027309.3-201ENST00000623419 351 ntBASIC3.09□□□□□ -1.91
CLDN3O15551 AP002371.2-201ENST00000624450 503 ntBASIC3.09□□□□□ -1.91
CLDN3O15551 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.91
CLDN3O15551 AC005539.1-201ENST00000443768 1479 ntBASIC3.09□□□□□ -1.92
CLDN3O15551 MTCO1P9-201ENST00000505577 1534 ntBASIC3.09□□□□□ -1.92
CLDN3O15551 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
CLDN3O15551 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
CLDN3O15551 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
CLDN3O15551 RNU5A-1-201ENST00000362698 116 ntBASIC3.08□□□□□ -1.92
CLDN3O15551 BMS1P22-201ENST00000414726 313 ntBASIC3.08□□□□□ -1.92
CLDN3O15551 AL451074.5-201ENST00000415894 435 ntBASIC3.08□□□□□ -1.92
CLDN3O15551 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC3.08□□□□□ -1.92
CLDN3O15551 AC087499.2-201ENST00000432861 149 ntBASIC3.08□□□□□ -1.92
CLDN3O15551 RPS29P6-201ENST00000438196 145 ntBASIC3.08□□□□□ -1.92
CLDN3O15551 RPL26P6-201ENST00000440913 438 ntBASIC3.08□□□□□ -1.92
CLDN3O15551 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC3.08□□□□□ -1.92
CLDN3O15551 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC3.08□□□□□ -1.92
CLDN3O15551 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC3.08□□□□□ -1.92
CLDN3O15551 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC3.08□□□□□ -1.92
CLDN3O15551 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC3.08□□□□□ -1.92
CLDN3O15551 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
CLDN3O15551 FAM172BP-201ENST00000487497 1089 ntBASIC3.08□□□□□ -1.92
CLDN3O15551 AC096576.1-201ENST00000489014 359 ntBASIC3.08□□□□□ -1.92
CLDN3O15551 POU5F1P7-201ENST00000508759 541 ntBASIC3.08□□□□□ -1.92
CLDN3O15551 AC093677.1-201ENST00000514414 678 ntBASIC3.08□□□□□ -1.92
CLDN3O15551 AC112206.4-201ENST00000515142 405 ntBASIC3.08□□□□□ -1.92
CLDN3O15551 AC026801.2-201ENST00000515352 425 ntBASIC3.08□□□□□ -1.92
CLDN3O15551 AC091163.3-201ENST00000518269 1144 ntBASIC3.08□□□□□ -1.92
CLDN3O15551 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC3.08□□□□□ -1.92
CLDN3O15551 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC3.08□□□□□ -1.92
CLDN3O15551 AC005832.3-201ENST00000537929 631 ntBASIC3.08□□□□□ -1.92
CLDN3O15551 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC3.08□□□□□ -1.92
CLDN3O15551 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.08□□□□□ -1.92
CLDN3O15551 ELOCP29-201ENST00000588193 334 ntBASIC3.08□□□□□ -1.92
CLDN3O15551 GLUD1P4-201ENST00000590914 418 ntBASIC3.08□□□□□ -1.92
CLDN3O15551 AC079089.3-201ENST00000603094 673 ntBASIC3.08□□□□□ -1.92
CLDN3O15551 AC012119.1-201ENST00000603184 222 ntBASIC3.08□□□□□ -1.92
CLDN3O15551 AC021749.1-201ENST00000604322 607 ntBASIC3.08□□□□□ -1.92
CLDN3O15551 NUTF2P8-201ENST00000604593 363 ntBASIC3.08□□□□□ -1.92
CLDN3O15551 AL033523.1-201ENST00000605153 153 ntBASIC3.08□□□□□ -1.92
CLDN3O15551 AL450472.3-201ENST00000615578 367 ntBASIC3.08□□□□□ -1.92
CLDN3O15551 Z99129.2-201ENST00000619967 314 ntBASIC3.08□□□□□ -1.92
CLDN3O15551 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC3.08□□□□□ -1.92
CLDN3O15551 AC231657.1-201ENST00000624313 397 ntBASIC3.08□□□□□ -1.92
CLDN3O15551 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.08□□□□□ -1.92
CLDN3O15551 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.08□□□□□ -1.92
CLDN3O15551 AC108206.1-201ENST00000570186 4159 ntBASIC3.08□□□□□ -1.92
CLDN3O15551 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
CLDN3O15551 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
CLDN3O15551 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
CLDN3O15551 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.08□□□□□ -1.92
CLDN3O15551 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
CLDN3O15551 RNU6-799P-201ENST00000363567 107 ntBASIC3.07□□□□□ -1.92
CLDN3O15551 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
CLDN3O15551 AL355143.1-201ENST00000407101 841 ntBASIC3.07□□□□□ -1.92
CLDN3O15551 AL592310.1-201ENST00000414330 671 ntBASIC3.07□□□□□ -1.92
CLDN3O15551 B3GALNT1P1-201ENST00000420569 975 ntBASIC3.07□□□□□ -1.92
CLDN3O15551 RPL23AP76-201ENST00000441860 458 ntBASIC3.07□□□□□ -1.92
CLDN3O15551 AC112653.1-201ENST00000443851 386 ntBASIC3.07□□□□□ -1.92
CLDN3O15551 RPL18AP17-201ENST00000455326 198 ntBASIC3.07□□□□□ -1.92
CLDN3O15551 snoU13.8-201ENST00000458890 104 ntBASIC3.07□□□□□ -1.92
CLDN3O15551 AP001025.2-201ENST00000490908 477 ntBASIC3.07□□□□□ -1.92
CLDN3O15551 AC096571.1-202ENST00000506634 735 ntBASIC3.07□□□□□ -1.92
CLDN3O15551 AC117522.3-201ENST00000507974 584 ntBASIC3.07□□□□□ -1.92
CLDN3O15551 PANCR-202ENST00000513690 448 ntTSL 2 BASIC3.07□□□□□ -1.92
CLDN3O15551 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC3.07□□□□□ -1.92
CLDN3O15551 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC3.07□□□□□ -1.92
CLDN3O15551 CA1-215ENST00000522389 551 ntTSL 3 BASIC3.07□□□□□ -1.92
CLDN3O15551 CASP1P1-201ENST00000526345 212 ntBASIC3.07□□□□□ -1.92
CLDN3O15551 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
CLDN3O15551 YWHAZP1-201ENST00000556286 722 ntBASIC3.07□□□□□ -1.92
CLDN3O15551 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC3.07□□□□□ -1.92
CLDN3O15551 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC3.07□□□□□ -1.92
CLDN3O15551 MIR3609-201ENST00000582661 80 ntBASIC3.07□□□□□ -1.92
CLDN3O15551 AC011451.2-201ENST00000604303 598 ntBASIC3.07□□□□□ -1.92
CLDN3O15551 AL137843.1-201ENST00000605078 385 ntBASIC3.07□□□□□ -1.92
CLDN3O15551 AL020991.1-201ENST00000612314 373 ntBASIC3.07□□□□□ -1.92
CLDN3O15551 AC006213.4-201ENST00000616184 634 ntBASIC3.07□□□□□ -1.92
CLDN3O15551 AC008443.7-201ENST00000622195 246 ntBASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 79.7 ms