Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC2.59□□□□□ -1.99
CCDC88BA6NC98 MTCYBP37-201ENST00000510642 1133 ntBASIC2.59□□□□□ -1.99
CCDC88BA6NC98 RNA5SP82-201ENST00000516707 92 ntBASIC2.59□□□□□ -1.99
CCDC88BA6NC98 RNA5SP102-201ENST00000516865 106 ntBASIC2.59□□□□□ -1.99
CCDC88BA6NC98 RN7SKP40-201ENST00000517211 242 ntBASIC2.59□□□□□ -1.99
CCDC88BA6NC98 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC2.59□□□□□ -1.99
CCDC88BA6NC98 AC024614.2-201ENST00000577584 372 ntBASIC2.59□□□□□ -1.99
CCDC88BA6NC98 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC2.59□□□□□ -1.99
CCDC88BA6NC98 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC2.59□□□□□ -2
CCDC88BA6NC98 RNY1P14-201ENST00000384426 108 ntBASIC2.58□□□□□ -2
CCDC88BA6NC98 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC2.58□□□□□ -2
CCDC88BA6NC98 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC2.58□□□□□ -2
CCDC88BA6NC98 AC023424.2-201ENST00000493479 777 ntBASIC2.58□□□□□ -2
CCDC88BA6NC98 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC2.58□□□□□ -2
CCDC88BA6NC98 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC2.58□□□□□ -2
CCDC88BA6NC98 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.58□□□□□ -2
CCDC88BA6NC98 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC2.58□□□□□ -2
CCDC88BA6NC98 AL589935.2-201ENST00000616471 1231 ntBASIC2.58□□□□□ -2
CCDC88BA6NC98 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC2.58□□□□□ -2
CCDC88BA6NC98 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC2.58□□□□□ -2
CCDC88BA6NC98 FO393414.1-201ENST00000428697 1184 ntBASIC2.58□□□□□ -2
CCDC88BA6NC98 AIG1P1-201ENST00000503376 148 ntBASIC2.58□□□□□ -2
CCDC88BA6NC98 AC025755.1-201ENST00000521306 278 ntBASIC2.58□□□□□ -2
CCDC88BA6NC98 AL161713.1-201ENST00000555538 145 ntBASIC2.58□□□□□ -2
CCDC88BA6NC98 MYL12BP1-201ENST00000569826 507 ntBASIC2.58□□□□□ -2
CCDC88BA6NC98 YWHAQP7-201ENST00000603536 658 ntBASIC2.58□□□□□ -2
CCDC88BA6NC98 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC2.57□□□□□ -2
CCDC88BA6NC98 AC073264.1-201ENST00000411508 416 ntBASIC2.57□□□□□ -2
CCDC88BA6NC98 AC244505.5-201ENST00000443639 207 ntBASIC2.57□□□□□ -2
CCDC88BA6NC98 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC2.57□□□□□ -2
CCDC88BA6NC98 RNU7-157P-201ENST00000459600 66 ntBASIC2.57□□□□□ -2
CCDC88BA6NC98 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC2.57□□□□□ -2
CCDC88BA6NC98 RN7SL274P-201ENST00000492268 272 ntBASIC2.57□□□□□ -2
CCDC88BA6NC98 Y_RNA.670-201ENST00000516255 105 ntBASIC2.57□□□□□ -2
CCDC88BA6NC98 AC007115.1-201ENST00000546853 234 ntBASIC2.57□□□□□ -2
CCDC88BA6NC98 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC2.57□□□□□ -2
CCDC88BA6NC98 ACTR3BP3-201ENST00000565577 979 ntBASIC2.57□□□□□ -2
CCDC88BA6NC98 AC010200.2-201ENST00000605098 235 ntBASIC2.57□□□□□ -2
CCDC88BA6NC98 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC2.56□□□□□ -2
CCDC88BA6NC98 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC2.56□□□□□ -2
CCDC88BA6NC98 AL513185.2-201ENST00000425543 193 ntBASIC2.56□□□□□ -2
CCDC88BA6NC98 TRAPPC2P9-201ENST00000434556 343 ntBASIC2.56□□□□□ -2
CCDC88BA6NC98 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC2.56□□□□□ -2
CCDC88BA6NC98 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC2.56□□□□□ -2
CCDC88BA6NC98 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC2.56□□□□□ -2
CCDC88BA6NC98 HSPE1P20-201ENST00000538133 289 ntBASIC2.56□□□□□ -2
CCDC88BA6NC98 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC2.56□□□□□ -2
CCDC88BA6NC98 MIR4474-201ENST00000579189 78 ntBASIC2.56□□□□□ -2
CCDC88BA6NC98 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.56□□□□□ -2
CCDC88BA6NC98 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC2.55□□□□□ -2
CCDC88BA6NC98 AP002748.2-201ENST00000528671 348 ntBASIC2.55□□□□□ -2
CCDC88BA6NC98 AC012493.3-201ENST00000604494 112 ntBASIC2.55□□□□□ -2
CCDC88BA6NC98 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC2.55□□□□□ -2
CCDC88BA6NC98 NF1-214ENST00000490416 1329 ntTSL 3 BASIC2.55□□□□□ -2
CCDC88BA6NC98 MIR96-201ENST00000362288 78 ntBASIC2.54□□□□□ -2
CCDC88BA6NC98 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC2.54□□□□□ -2
CCDC88BA6NC98 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC2.54□□□□□ -2
CCDC88BA6NC98 AC096571.1-202ENST00000506634 735 ntBASIC2.54□□□□□ -2
CCDC88BA6NC98 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC2.54□□□□□ -2
CCDC88BA6NC98 AC106730.3-201ENST00000624568 641 ntBASIC2.54□□□□□ -2
CCDC88BA6NC98 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC2.54□□□□□ -2
CCDC88BA6NC98 SNORA31-201ENST00000362607 130 ntBASIC2.53□□□□□ -2
CCDC88BA6NC98 RNU1-109P-201ENST00000383960 147 ntBASIC2.53□□□□□ -2
CCDC88BA6NC98 RNU1-101P-201ENST00000391171 127 ntBASIC2.53□□□□□ -2
CCDC88BA6NC98 RPL23AP29-201ENST00000397284 453 ntBASIC2.53□□□□□ -2
CCDC88BA6NC98 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC2.53□□□□□ -2
CCDC88BA6NC98 USP9YP6-201ENST00000413550 854 ntBASIC2.53□□□□□ -2
CCDC88BA6NC98 MTCO3P21-201ENST00000430791 643 ntBASIC2.53□□□□□ -2
CCDC88BA6NC98 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC2.53□□□□□ -2
CCDC88BA6NC98 Z99714.1-201ENST00000450463 807 ntBASIC2.53□□□□□ -2
CCDC88BA6NC98 USP9YP34-201ENST00000453983 808 ntBASIC2.53□□□□□ -2
CCDC88BA6NC98 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC2.53□□□□□ -2
CCDC88BA6NC98 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC2.53□□□□□ -2
CCDC88BA6NC98 AC022790.1-201ENST00000522872 204 ntBASIC2.53□□□□□ -2
CCDC88BA6NC98 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC2.53□□□□□ -2
CCDC88BA6NC98 MTCO3P24-201ENST00000572729 782 ntBASIC2.53□□□□□ -2
CCDC88BA6NC98 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC2.53□□□□□ -2
CCDC88BA6NC98 AL157834.3-201ENST00000615543 103 ntBASIC2.53□□□□□ -2
CCDC88BA6NC98 AL353770.2-201ENST00000620024 78 ntBASIC2.53□□□□□ -2
CCDC88BA6NC98 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC2.53□□□□□ -2.01
CCDC88BA6NC98 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC2.53□□□□□ -2.01
CCDC88BA6NC98 RNA5SP189-201ENST00000364920 115 ntBASIC2.52□□□□□ -2.01
CCDC88BA6NC98 AL445669.1-201ENST00000426743 755 ntBASIC2.52□□□□□ -2.01
CCDC88BA6NC98 RPL23AP16-201ENST00000441715 421 ntBASIC2.52□□□□□ -2.01
CCDC88BA6NC98 HAUS1P1-201ENST00000505275 832 ntBASIC2.52□□□□□ -2.01
CCDC88BA6NC98 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC2.52□□□□□ -2.01
CCDC88BA6NC98 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC2.52□□□□□ -2.01
CCDC88BA6NC98 RNA5SP364-201ENST00000516938 78 ntBASIC2.52□□□□□ -2.01
CCDC88BA6NC98 OR4V1P-201ENST00000525394 1140 ntBASIC2.52□□□□□ -2.01
CCDC88BA6NC98 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC2.52□□□□□ -2.01
CCDC88BA6NC98 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC2.52□□□□□ -2.01
CCDC88BA6NC98 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC2.52□□□□□ -2.01
CCDC88BA6NC98 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC2.52□□□□□ -2.01
CCDC88BA6NC98 MIR3660-201ENST00000584845 100 ntBASIC2.52□□□□□ -2.01
CCDC88BA6NC98 AL592494.3-201ENST00000609485 464 ntBASIC2.52□□□□□ -2.01
CCDC88BA6NC98 uc_338.12-201ENST00000616344 181 ntBASIC2.52□□□□□ -2.01
CCDC88BA6NC98 CR382285.2-201ENST00000624662 1495 ntBASIC2.52□□□□□ -2.01
CCDC88BA6NC98 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
CCDC88BA6NC98 RNU4-52P-201ENST00000384209 138 ntBASIC2.52□□□□□ -2.01
CCDC88BA6NC98 HMGB1P10-201ENST00000395823 563 ntBASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms