Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 RAC1P2-201ENST00000511164 579 ntBASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 RNA5SP208-201ENST00000516156 78 ntBASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 RNU6-445P-201ENST00000516949 107 ntBASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 HMGN1P28-201ENST00000521340 364 ntBASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 AP003072.2-201ENST00000527756 676 ntBASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 AC234778.2-201ENST00000566241 354 ntBASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 AL591034.3-201ENST00000605511 685 ntBASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 AC092954.2-201ENST00000609103 430 ntBASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 AC017083.3-201ENST00000609955 700 ntBASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 AC079684.1-201ENST00000621405 437 ntBASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 AL356489.2-201ENST00000566968 3528 ntBASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 MTCO1P9-201ENST00000505577 1534 ntBASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 AC244517.1-201ENST00000606030 2086 ntBASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 DPY19L2P2-203ENST00000435536 1858 ntBASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 AC004520.1-201ENST00000608362 1413 ntBASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 ST7-221ENST00000465133 2155 ntTSL 5 BASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 RNY4P16-201ENST00000364768 94 ntBASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 RNA5SP97-201ENST00000365006 84 ntBASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 Y_RNA.481-201ENST00000384373 102 ntBASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 Y_RNA.548-201ENST00000384656 105 ntBASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 MIR19A-201ENST00000384878 82 ntBASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 RPS26P8-201ENST00000393490 348 ntBASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 RPL7P60-201ENST00000397636 735 ntBASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 RNU2-47P-201ENST00000410649 186 ntBASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 RNU4-78P-201ENST00000410940 126 ntBASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 CCDC58P2-201ENST00000417131 366 ntBASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 AC069157.1-201ENST00000421749 137 ntBASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 AL596276.1-201ENST00000434465 418 ntBASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 RPL35AP22-201ENST00000436855 335 ntBASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 RBMX2P4-201ENST00000441256 376 ntBASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 RNU7-59P-201ENST00000459101 61 ntBASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 RPS7P7-201ENST00000463499 571 ntBASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 AL121769.1-201ENST00000469473 401 ntBASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 RPS3AP14-201ENST00000483907 780 ntBASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 AC019235.1-201ENST00000503847 207 ntBASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 AC009646.1-201ENST00000510455 318 ntBASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 AL512310.1-201ENST00000548639 172 ntBASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 ARL1-211ENST00000551828 776 ntTSL 5 BASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 AC092325.1-201ENST00000566449 554 ntBASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 MIR3167-201ENST00000579623 85 ntBASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 AC006254.3-201ENST00000603353 884 ntBASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 AC012507.3-201ENST00000603556 477 ntBASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 AC007363.1-201ENST00000604736 620 ntBASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 AC007038.2-201ENST00000608095 740 ntBASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 AL391813.2-201ENST00000609113 322 ntBASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 AC112204.3-201ENST00000623822 332 ntBASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 AC244258.1-201ENST00000637553 1071 ntBASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 LRRC77P-213ENST00000637727 880 ntBASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.49□□□□□ -1.69
LIMCH1Q9UPQ0 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 RNU6-263P-201ENST00000363811 107 ntBASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 Y_RNA.450-201ENST00000384198 113 ntBASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 Y_RNA.573-201ENST00000384763 105 ntBASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 RN7SKP285-201ENST00000410137 318 ntBASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 RPS15AP12-201ENST00000419498 388 ntBASIC4.48□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 113.8 ms