Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 RPS3AP50-201ENST00000487064 803 ntBASIC4.04□□□□□ -1.76
VSX1Q9NZR4 AC008897.1-201ENST00000494006 347 ntBASIC4.04□□□□□ -1.76
VSX1Q9NZR4 EIF4EP3-201ENST00000498782 656 ntBASIC4.04□□□□□ -1.76
VSX1Q9NZR4 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC4.04□□□□□ -1.76
VSX1Q9NZR4 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC4.04□□□□□ -1.76
VSX1Q9NZR4 NDUFB5P1-201ENST00000508134 564 ntBASIC4.04□□□□□ -1.76
VSX1Q9NZR4 RNU6-1095P-201ENST00000516148 108 ntBASIC4.04□□□□□ -1.76
VSX1Q9NZR4 IGKV1-32-201ENST00000519290 311 ntBASIC4.04□□□□□ -1.76
VSX1Q9NZR4 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC4.04□□□□□ -1.76
VSX1Q9NZR4 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC4.04□□□□□ -1.76
VSX1Q9NZR4 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC4.04□□□□□ -1.76
VSX1Q9NZR4 AP001922.4-201ENST00000526967 290 ntBASIC4.04□□□□□ -1.76
VSX1Q9NZR4 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC4.04□□□□□ -1.76
VSX1Q9NZR4 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
VSX1Q9NZR4 AC087241.2-201ENST00000535801 324 ntBASIC4.04□□□□□ -1.76
VSX1Q9NZR4 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC4.04□□□□□ -1.76
VSX1Q9NZR4 AC125611.2-201ENST00000551907 647 ntBASIC4.04□□□□□ -1.76
VSX1Q9NZR4 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC4.04□□□□□ -1.76
VSX1Q9NZR4 RPS3AP23-202ENST00000574601 686 ntBASIC4.04□□□□□ -1.76
VSX1Q9NZR4 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC4.04□□□□□ -1.76
VSX1Q9NZR4 LLPHP1-201ENST00000603571 367 ntBASIC4.04□□□□□ -1.76
VSX1Q9NZR4 AC010201.1-201ENST00000605051 540 ntBASIC4.04□□□□□ -1.76
VSX1Q9NZR4 AC090948.1-201ENST00000607464 549 ntBASIC4.04□□□□□ -1.76
VSX1Q9NZR4 AL031666.3-201ENST00000609320 1006 ntBASIC4.04□□□□□ -1.76
VSX1Q9NZR4 uc_338.5-201ENST00000611839 155 ntBASIC4.04□□□□□ -1.76
VSX1Q9NZR4 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.04□□□□□ -1.76
VSX1Q9NZR4 SNHG22-203ENST00000617833 660 ntBASIC4.04□□□□□ -1.76
VSX1Q9NZR4 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.04□□□□□ -1.76
VSX1Q9NZR4 AC100810.6-201ENST00000638068 285 ntBASIC4.04□□□□□ -1.76
VSX1Q9NZR4 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC4.04□□□□□ -1.76
VSX1Q9NZR4 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
VSX1Q9NZR4 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
VSX1Q9NZR4 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.04□□□□□ -1.76
VSX1Q9NZR4 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.04□□□□□ -1.76
VSX1Q9NZR4 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.04□□□□□ -1.76
VSX1Q9NZR4 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
VSX1Q9NZR4 AC139769.1-204ENST00000472297 1931 ntBASIC4.03□□□□□ -1.76
VSX1Q9NZR4 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
VSX1Q9NZR4 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
VSX1Q9NZR4 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
VSX1Q9NZR4 AC021146.4-201ENST00000309229 279 ntBASIC4.03□□□□□ -1.76
VSX1Q9NZR4 AL590240.1-201ENST00000334118 313 ntBASIC4.03□□□□□ -1.76
VSX1Q9NZR4 RNU4-73P-201ENST00000363164 141 ntBASIC4.03□□□□□ -1.76
VSX1Q9NZR4 Y_RNA.231-201ENST00000364358 102 ntBASIC4.03□□□□□ -1.76
VSX1Q9NZR4 SNORD81.2-201ENST00000365153 76 ntBASIC4.03□□□□□ -1.76
VSX1Q9NZR4 RNA5SP22-201ENST00000365393 109 ntBASIC4.03□□□□□ -1.76
VSX1Q9NZR4 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
VSX1Q9NZR4 RNU6-116P-201ENST00000384042 109 ntBASIC4.03□□□□□ -1.76
VSX1Q9NZR4 RNU1-44P-201ENST00000384453 163 ntBASIC4.03□□□□□ -1.76
VSX1Q9NZR4 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
VSX1Q9NZR4 RNU6-332P-201ENST00000391193 108 ntBASIC4.03□□□□□ -1.76
VSX1Q9NZR4 RN7SKP167-201ENST00000411047 285 ntBASIC4.03□□□□□ -1.76
VSX1Q9NZR4 RN7SKP263-201ENST00000411194 309 ntBASIC4.03□□□□□ -1.76
VSX1Q9NZR4 RN7SKP140-201ENST00000411196 284 ntBASIC4.03□□□□□ -1.76
VSX1Q9NZR4 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
VSX1Q9NZR4 OR6C66P-201ENST00000414917 930 ntBASIC4.03□□□□□ -1.76
VSX1Q9NZR4 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC4.03□□□□□ -1.76
VSX1Q9NZR4 AC004552.1-201ENST00000419089 348 ntBASIC4.03□□□□□ -1.76
VSX1Q9NZR4 AC099677.1-201ENST00000420575 175 ntBASIC4.03□□□□□ -1.76
VSX1Q9NZR4 AC008850.1-201ENST00000427546 362 ntBASIC4.03□□□□□ -1.76
VSX1Q9NZR4 CALM2P2-201ENST00000428512 440 ntBASIC4.03□□□□□ -1.76
VSX1Q9NZR4 ERLEC1P1-201ENST00000433806 578 ntBASIC4.03□□□□□ -1.76
VSX1Q9NZR4 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC4.03□□□□□ -1.76
VSX1Q9NZR4 RPL35AP28-201ENST00000459730 331 ntBASIC4.03□□□□□ -1.76
VSX1Q9NZR4 AC007547.1-201ENST00000462177 490 ntBASIC4.03□□□□□ -1.76
VSX1Q9NZR4 RPS26P3-201ENST00000470205 348 ntBASIC4.03□□□□□ -1.76
VSX1Q9NZR4 AC090543.2-201ENST00000483963 348 ntBASIC4.03□□□□□ -1.76
VSX1Q9NZR4 AC004057.1-201ENST00000485827 348 ntBASIC4.03□□□□□ -1.76
VSX1Q9NZR4 AC020593.1-201ENST00000507399 299 ntBASIC4.03□□□□□ -1.76
VSX1Q9NZR4 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC4.03□□□□□ -1.76
VSX1Q9NZR4 OR51K1P-201ENST00000510214 950 ntBASIC4.03□□□□□ -1.76
VSX1Q9NZR4 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC4.03□□□□□ -1.76
VSX1Q9NZR4 RN7SKP219-201ENST00000516825 296 ntBASIC4.03□□□□□ -1.76
VSX1Q9NZR4 RNU6-1092P-201ENST00000516955 87 ntBASIC4.03□□□□□ -1.76
VSX1Q9NZR4 RNA5SP503-201ENST00000517047 117 ntBASIC4.03□□□□□ -1.76
VSX1Q9NZR4 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC4.03□□□□□ -1.76
VSX1Q9NZR4 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC4.03□□□□□ -1.76
VSX1Q9NZR4 SUB1P1-201ENST00000524415 382 ntBASIC4.03□□□□□ -1.76
VSX1Q9NZR4 OR5AL2P-201ENST00000532185 920 ntBASIC4.03□□□□□ -1.76
VSX1Q9NZR4 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC4.03□□□□□ -1.76
VSX1Q9NZR4 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
VSX1Q9NZR4 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
VSX1Q9NZR4 AC011611.1-201ENST00000552179 197 ntBASIC4.03□□□□□ -1.76
VSX1Q9NZR4 AL442663.2-201ENST00000554385 511 ntBASIC4.03□□□□□ -1.76
VSX1Q9NZR4 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC4.03□□□□□ -1.76
VSX1Q9NZR4 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC4.03□□□□□ -1.76
VSX1Q9NZR4 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC4.03□□□□□ -1.76
VSX1Q9NZR4 RNA5SP108-201ENST00000605921 117 ntBASIC4.03□□□□□ -1.76
VSX1Q9NZR4 AL121992.2-201ENST00000606262 256 ntBASIC4.03□□□□□ -1.76
VSX1Q9NZR4 AL022345.1-201ENST00000607292 135 ntBASIC4.03□□□□□ -1.76
VSX1Q9NZR4 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.03□□□□□ -1.76
VSX1Q9NZR4 AC099669.2-201ENST00000616549 437 ntBASIC4.03□□□□□ -1.76
VSX1Q9NZR4 AC055839.1-201ENST00000634467 498 ntBASIC4.03□□□□□ -1.76
VSX1Q9NZR4 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
VSX1Q9NZR4 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.03□□□□□ -1.76
VSX1Q9NZR4 AL136964.1-201ENST00000622038 2990 ntBASIC4.03□□□□□ -1.76
VSX1Q9NZR4 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
VSX1Q9NZR4 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
VSX1Q9NZR4 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
VSX1Q9NZR4 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms