Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.2□□□□□ -1.9
RNF41Q9H4P4 AC092427.1-201ENST00000439177 601 ntBASIC3.2□□□□□ -1.9
RNF41Q9H4P4 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC3.2□□□□□ -1.9
RNF41Q9H4P4 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC3.2□□□□□ -1.9
RNF41Q9H4P4 ZNF736P8Y-201ENST00000451913 669 ntBASIC3.2□□□□□ -1.9
RNF41Q9H4P4 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.2□□□□□ -1.9
RNF41Q9H4P4 HMGB1P25-201ENST00000468402 607 ntBASIC3.2□□□□□ -1.9
RNF41Q9H4P4 AC090525.1-201ENST00000479116 478 ntBASIC3.2□□□□□ -1.9
RNF41Q9H4P4 RNA5SP385-201ENST00000515947 110 ntBASIC3.2□□□□□ -1.9
RNF41Q9H4P4 RNU6-583P-201ENST00000516012 92 ntBASIC3.2□□□□□ -1.9
RNF41Q9H4P4 RN7SKP244-201ENST00000516513 307 ntBASIC3.2□□□□□ -1.9
RNF41Q9H4P4 SNORA31.21-201ENST00000517180 77 ntBASIC3.2□□□□□ -1.9
RNF41Q9H4P4 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC3.2□□□□□ -1.9
RNF41Q9H4P4 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC3.2□□□□□ -1.9
RNF41Q9H4P4 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC3.2□□□□□ -1.9
RNF41Q9H4P4 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC3.2□□□□□ -1.9
RNF41Q9H4P4 AC008127.2-201ENST00000549925 1075 ntBASIC3.2□□□□□ -1.9
RNF41Q9H4P4 HSPE1P3-201ENST00000559254 309 ntBASIC3.2□□□□□ -1.9
RNF41Q9H4P4 AC009097.3-201ENST00000563557 1018 ntBASIC3.2□□□□□ -1.9
RNF41Q9H4P4 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.2□□□□□ -1.9
RNF41Q9H4P4 MIR4637-201ENST00000582405 84 ntBASIC3.2□□□□□ -1.9
RNF41Q9H4P4 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC3.2□□□□□ -1.9
RNF41Q9H4P4 AC061975.8-201ENST00000587058 721 ntBASIC3.2□□□□□ -1.9
RNF41Q9H4P4 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.2□□□□□ -1.9
RNF41Q9H4P4 AC012119.1-201ENST00000603184 222 ntBASIC3.2□□□□□ -1.9
RNF41Q9H4P4 AC011468.4-201ENST00000603942 409 ntBASIC3.2□□□□□ -1.9
RNF41Q9H4P4 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC3.2□□□□□ -1.9
RNF41Q9H4P4 CYP3A51P-201ENST00000633513 256 ntBASIC3.2□□□□□ -1.9
RNF41Q9H4P4 AC116618.1-201ENST00000634617 774 ntBASIC3.2□□□□□ -1.9
RNF41Q9H4P4 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.2□□□□□ -1.9
RNF41Q9H4P4 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
RNF41Q9H4P4 AL365361.1-201ENST00000566942 3481 ntBASIC3.19□□□□□ -1.9
RNF41Q9H4P4 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC3.19□□□□□ -1.9
RNF41Q9H4P4 SNORA5B-201ENST00000363786 132 ntBASIC3.19□□□□□ -1.9
RNF41Q9H4P4 Y_RNA.311-201ENST00000365068 96 ntBASIC3.19□□□□□ -1.9
RNF41Q9H4P4 CUBN-201ENST00000377823 705 ntTSL 3 BASIC3.19□□□□□ -1.9
RNF41Q9H4P4 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
RNF41Q9H4P4 RPL17P50-201ENST00000396131 546 ntBASIC3.19□□□□□ -1.9
RNF41Q9H4P4 AL122016.1-201ENST00000403365 367 ntBASIC3.19□□□□□ -1.9
RNF41Q9H4P4 SNORD88.1-201ENST00000408684 91 ntBASIC3.19□□□□□ -1.9
RNF41Q9H4P4 RPS24P7-201ENST00000416921 246 ntBASIC3.19□□□□□ -1.9
RNF41Q9H4P4 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC3.19□□□□□ -1.9
RNF41Q9H4P4 LAMTOR3P1-201ENST00000428620 370 ntBASIC3.19□□□□□ -1.9
RNF41Q9H4P4 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
RNF41Q9H4P4 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC3.19□□□□□ -1.9
RNF41Q9H4P4 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.19□□□□□ -1.9
RNF41Q9H4P4 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC3.19□□□□□ -1.9
RNF41Q9H4P4 AP001486.1-201ENST00000463339 476 ntBASIC3.19□□□□□ -1.9
RNF41Q9H4P4 RPS15AP17-201ENST00000470598 390 ntBASIC3.19□□□□□ -1.9
RNF41Q9H4P4 SYPL1P1-201ENST00000473622 768 ntBASIC3.19□□□□□ -1.9
RNF41Q9H4P4 RPL23AP11-201ENST00000475260 469 ntBASIC3.19□□□□□ -1.9
RNF41Q9H4P4 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC3.19□□□□□ -1.9
RNF41Q9H4P4 RPL23AP55-201ENST00000498163 452 ntBASIC3.19□□□□□ -1.9
RNF41Q9H4P4 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
RNF41Q9H4P4 AC006499.2-201ENST00000513470 337 ntBASIC3.19□□□□□ -1.9
RNF41Q9H4P4 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC3.19□□□□□ -1.9
RNF41Q9H4P4 AC034159.1-201ENST00000513885 583 ntBASIC3.19□□□□□ -1.9
RNF41Q9H4P4 RNA5SP356-201ENST00000515972 94 ntBASIC3.19□□□□□ -1.9
RNF41Q9H4P4 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC3.19□□□□□ -1.9
RNF41Q9H4P4 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC3.19□□□□□ -1.9
RNF41Q9H4P4 AP003385.6-201ENST00000531603 374 ntBASIC3.19□□□□□ -1.9
RNF41Q9H4P4 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
RNF41Q9H4P4 AC023050.2-201ENST00000544968 387 ntBASIC3.19□□□□□ -1.9
RNF41Q9H4P4 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC3.19□□□□□ -1.9
RNF41Q9H4P4 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC3.19□□□□□ -1.9
RNF41Q9H4P4 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC3.19□□□□□ -1.9
RNF41Q9H4P4 AC090616.5-202ENST00000582111 297 ntBASIC3.19□□□□□ -1.9
RNF41Q9H4P4 SNRPGP15-201ENST00000600149 222 ntBASIC3.19□□□□□ -1.9
RNF41Q9H4P4 AC013244.3-201ENST00000605614 388 ntBASIC3.19□□□□□ -1.9
RNF41Q9H4P4 AC079395.3-201ENST00000615161 484 ntBASIC3.19□□□□□ -1.9
RNF41Q9H4P4 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
RNF41Q9H4P4 AC011330.2-201ENST00000621680 635 ntBASIC3.19□□□□□ -1.9
RNF41Q9H4P4 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC3.19□□□□□ -1.9
RNF41Q9H4P4 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
RNF41Q9H4P4 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC3.19□□□□□ -1.9
RNF41Q9H4P4 MTND2P41-201ENST00000637599 773 ntBASIC3.19□□□□□ -1.9
RNF41Q9H4P4 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC3.19□□□□□ -1.9
RNF41Q9H4P4 FAM35CP-201ENST00000554755 2470 ntBASIC3.19□□□□□ -1.9
RNF41Q9H4P4 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
RNF41Q9H4P4 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
RNF41Q9H4P4 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
RNF41Q9H4P4 RNU6-600P-201ENST00000362524 99 ntBASIC3.18□□□□□ -1.9
RNF41Q9H4P4 RNU6-859P-201ENST00000362728 107 ntBASIC3.18□□□□□ -1.9
RNF41Q9H4P4 RNVU1-3-201ENST00000364313 161 ntBASIC3.18□□□□□ -1.9
RNF41Q9H4P4 RNU6-157P-201ENST00000383957 107 ntBASIC3.18□□□□□ -1.9
RNF41Q9H4P4 RSL24D1P4-201ENST00000400938 484 ntBASIC3.18□□□□□ -1.9
RNF41Q9H4P4 RNU4-78P-201ENST00000410940 126 ntBASIC3.18□□□□□ -1.9
RNF41Q9H4P4 TOMM22P1-201ENST00000418578 312 ntBASIC3.18□□□□□ -1.9
RNF41Q9H4P4 HMGB1P49-201ENST00000418882 569 ntBASIC3.18□□□□□ -1.9
RNF41Q9H4P4 TIMM9P2-201ENST00000419324 266 ntBASIC3.18□□□□□ -1.9
RNF41Q9H4P4 XKRYP1-201ENST00000423438 492 ntBASIC3.18□□□□□ -1.9
RNF41Q9H4P4 AC019097.1-201ENST00000424783 735 ntBASIC3.18□□□□□ -1.9
RNF41Q9H4P4 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC3.18□□□□□ -1.9
RNF41Q9H4P4 AC063976.3-201ENST00000426849 329 ntBASIC3.18□□□□□ -1.9
RNF41Q9H4P4 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC3.18□□□□□ -1.9
RNF41Q9H4P4 XKRYP2-201ENST00000432915 492 ntBASIC3.18□□□□□ -1.9
RNF41Q9H4P4 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC3.18□□□□□ -1.9
RNF41Q9H4P4 ELOCP13-201ENST00000443934 329 ntBASIC3.18□□□□□ -1.9
RNF41Q9H4P4 OFD1P3Y-201ENST00000453312 783 ntBASIC3.18□□□□□ -1.9
RNF41Q9H4P4 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 107 ms