Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC3.43□□□□□ -1.86
USP28Q96RU2 OFD1P18Y-201ENST00000420889 959 ntBASIC3.43□□□□□ -1.86
USP28Q96RU2 AL353678.1-201ENST00000422735 741 ntBASIC3.43□□□□□ -1.86
USP28Q96RU2 AC012498.1-201ENST00000424037 437 ntBASIC3.43□□□□□ -1.86
USP28Q96RU2 RPL23AP69-201ENST00000431134 458 ntBASIC3.43□□□□□ -1.86
USP28Q96RU2 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC3.43□□□□□ -1.86
USP28Q96RU2 USP9YP35-201ENST00000435696 412 ntBASIC3.43□□□□□ -1.86
USP28Q96RU2 THAP5P1-201ENST00000439089 262 ntBASIC3.43□□□□□ -1.86
USP28Q96RU2 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.43□□□□□ -1.86
USP28Q96RU2 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC3.43□□□□□ -1.86
USP28Q96RU2 EEF1E1P1-201ENST00000446998 430 ntBASIC3.43□□□□□ -1.86
USP28Q96RU2 RPL37P4-201ENST00000448908 268 ntBASIC3.43□□□□□ -1.86
USP28Q96RU2 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.43□□□□□ -1.86
USP28Q96RU2 AC010301.1-201ENST00000473936 355 ntBASIC3.43□□□□□ -1.86
USP28Q96RU2 AP002812.1-201ENST00000495378 474 ntBASIC3.43□□□□□ -1.86
USP28Q96RU2 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC3.43□□□□□ -1.86
USP28Q96RU2 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC3.43□□□□□ -1.86
USP28Q96RU2 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC3.43□□□□□ -1.86
USP28Q96RU2 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC3.43□□□□□ -1.86
USP28Q96RU2 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC3.43□□□□□ -1.86
USP28Q96RU2 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
USP28Q96RU2 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC3.43□□□□□ -1.86
USP28Q96RU2 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC3.43□□□□□ -1.86
USP28Q96RU2 OR7K1P-201ENST00000546439 926 ntBASIC3.43□□□□□ -1.86
USP28Q96RU2 AKIRIN1P1-201ENST00000547384 544 ntBASIC3.43□□□□□ -1.86
USP28Q96RU2 SULT1C2P1-202ENST00000562418 459 ntBASIC3.43□□□□□ -1.86
USP28Q96RU2 AC064807.4-201ENST00000607201 407 ntBASIC3.43□□□□□ -1.86
USP28Q96RU2 AC024560.3-201ENST00000608482 349 ntBASIC3.43□□□□□ -1.86
USP28Q96RU2 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC3.43□□□□□ -1.86
USP28Q96RU2 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
USP28Q96RU2 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.43□□□□□ -1.86
USP28Q96RU2 OR5BR1P-201ENST00000524992 1330 ntBASIC3.43□□□□□ -1.86
USP28Q96RU2 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.42□□□□□ -1.86
USP28Q96RU2 MIR22-201ENST00000362190 85 ntBASIC3.42□□□□□ -1.86
USP28Q96RU2 RNU6-660P-201ENST00000364566 109 ntBASIC3.42□□□□□ -1.86
USP28Q96RU2 Y_RNA.318-201ENST00000365131 97 ntBASIC3.42□□□□□ -1.86
USP28Q96RU2 RNVU1-14-201ENST00000384770 164 ntBASIC3.42□□□□□ -1.86
USP28Q96RU2 RNA5SP56-201ENST00000410277 118 ntBASIC3.42□□□□□ -1.86
USP28Q96RU2 MTCO3P12-201ENST00000416718 547 ntBASIC3.42□□□□□ -1.86
USP28Q96RU2 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC3.42□□□□□ -1.86
USP28Q96RU2 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC3.42□□□□□ -1.86
USP28Q96RU2 OFD1P12Y-201ENST00000427963 1207 ntBASIC3.42□□□□□ -1.86
USP28Q96RU2 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.42□□□□□ -1.86
USP28Q96RU2 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.42□□□□□ -1.86
USP28Q96RU2 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC3.42□□□□□ -1.86
USP28Q96RU2 AC244505.4-201ENST00000434905 287 ntBASIC3.42□□□□□ -1.86
USP28Q96RU2 AL117351.1-201ENST00000438864 766 ntBASIC3.42□□□□□ -1.86
USP28Q96RU2 MTND2P20-201ENST00000440805 661 ntBASIC3.42□□□□□ -1.86
USP28Q96RU2 SSXP5-201ENST00000443473 287 ntBASIC3.42□□□□□ -1.86
USP28Q96RU2 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC3.42□□□□□ -1.86
USP28Q96RU2 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC3.42□□□□□ -1.86
USP28Q96RU2 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC3.42□□□□□ -1.86
USP28Q96RU2 MTCO1P48-201ENST00000448024 1096 ntBASIC3.42□□□□□ -1.86
USP28Q96RU2 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC3.42□□□□□ -1.86
USP28Q96RU2 AC104073.1-201ENST00000451988 151 ntBASIC3.42□□□□□ -1.86
USP28Q96RU2 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC3.42□□□□□ -1.86
USP28Q96RU2 MTCO3P2-201ENST00000457365 171 ntBASIC3.42□□□□□ -1.86
USP28Q96RU2 SETP11-201ENST00000473027 690 ntBASIC3.42□□□□□ -1.86
USP28Q96RU2 AC117440.1-201ENST00000474107 571 ntBASIC3.42□□□□□ -1.86
USP28Q96RU2 RN7SL504P-201ENST00000494496 287 ntBASIC3.42□□□□□ -1.86
USP28Q96RU2 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC3.42□□□□□ -1.86
USP28Q96RU2 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
USP28Q96RU2 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC3.42□□□□□ -1.86
USP28Q96RU2 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC3.42□□□□□ -1.86
USP28Q96RU2 MTCYBP43-201ENST00000513621 740 ntBASIC3.42□□□□□ -1.86
USP28Q96RU2 RNU6-583P-201ENST00000516012 92 ntBASIC3.42□□□□□ -1.86
USP28Q96RU2 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
USP28Q96RU2 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC3.42□□□□□ -1.86
USP28Q96RU2 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
USP28Q96RU2 CYCSP2-201ENST00000558168 301 ntBASIC3.42□□□□□ -1.86
USP28Q96RU2 AC055876.1-202ENST00000567053 138 ntBASIC3.42□□□□□ -1.86
USP28Q96RU2 MIR4444-1-201ENST00000581696 74 ntBASIC3.42□□□□□ -1.86
USP28Q96RU2 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC3.42□□□□□ -1.86
USP28Q96RU2 MIR4444-2-201ENST00000584390 74 ntBASIC3.42□□□□□ -1.86
USP28Q96RU2 AC083760.1-201ENST00000589621 670 ntBASIC3.42□□□□□ -1.86
USP28Q96RU2 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.42□□□□□ -1.86
USP28Q96RU2 WISP1-OT1-201ENST00000602893 642 ntBASIC3.42□□□□□ -1.86
USP28Q96RU2 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC3.42□□□□□ -1.86
USP28Q96RU2 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC3.42□□□□□ -1.86
USP28Q96RU2 AC009090.3-201ENST00000616553 565 ntBASIC3.42□□□□□ -1.86
USP28Q96RU2 AL031667.3-201ENST00000620124 655 ntBASIC3.42□□□□□ -1.86
USP28Q96RU2 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC3.42□□□□□ -1.86
USP28Q96RU2 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC3.42□□□□□ -1.86
USP28Q96RU2 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
USP28Q96RU2 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC3.42□□□□□ -1.86
USP28Q96RU2 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.42□□□□□ -1.86
USP28Q96RU2 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.42□□□□□ -1.86
USP28Q96RU2 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.42□□□□□ -1.86
USP28Q96RU2 AC118273.1-201ENST00000525324 3006 ntBASIC3.42□□□□□ -1.86
USP28Q96RU2 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.42□□□□□ -1.86
USP28Q96RU2 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
USP28Q96RU2 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
USP28Q96RU2 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.42□□□□□ -1.86
USP28Q96RU2 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.41□□□□□ -1.86
USP28Q96RU2 ELL2P3-201ENST00000457883 1602 ntBASIC3.41□□□□□ -1.86
USP28Q96RU2 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
USP28Q96RU2 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
USP28Q96RU2 AL353743.1-202ENST00000431724 1695 ntBASIC3.41□□□□□ -1.86
USP28Q96RU2 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
USP28Q96RU2 RNU6-433P-201ENST00000363216 104 ntBASIC3.41□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms