Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC3.39□□□□□ -1.87
CCDC43Q96MW1 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.39□□□□□ -1.87
CCDC43Q96MW1 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.39□□□□□ -1.87
CCDC43Q96MW1 MTCYBP23-201ENST00000558717 1102 ntBASIC3.39□□□□□ -1.87
CCDC43Q96MW1 GLUD1P4-201ENST00000590914 418 ntBASIC3.39□□□□□ -1.87
CCDC43Q96MW1 BBIP1P1-201ENST00000602999 279 ntBASIC3.39□□□□□ -1.87
CCDC43Q96MW1 DUXAP3-201ENST00000603616 594 ntBASIC3.39□□□□□ -1.87
CCDC43Q96MW1 AC011451.2-201ENST00000604303 598 ntBASIC3.39□□□□□ -1.87
CCDC43Q96MW1 AL357080.1-201ENST00000617394 239 ntBASIC3.39□□□□□ -1.87
CCDC43Q96MW1 AL445264.1-201ENST00000621719 171 ntBASIC3.39□□□□□ -1.87
CCDC43Q96MW1 AC008443.7-201ENST00000622195 246 ntBASIC3.39□□□□□ -1.87
CCDC43Q96MW1 AP003122.6-201ENST00000623831 495 ntBASIC3.39□□□□□ -1.87
CCDC43Q96MW1 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.39□□□□□ -1.87
CCDC43Q96MW1 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.39□□□□□ -1.87
CCDC43Q96MW1 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.39□□□□□ -1.87
CCDC43Q96MW1 MTCO1P9-201ENST00000505577 1534 ntBASIC3.39□□□□□ -1.87
CCDC43Q96MW1 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.39□□□□□ -1.87
CCDC43Q96MW1 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.38□□□□□ -1.87
CCDC43Q96MW1 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
CCDC43Q96MW1 ANKRD62P1-201ENST00000434304 1623 ntBASIC3.38□□□□□ -1.87
CCDC43Q96MW1 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC3.38□□□□□ -1.87
CCDC43Q96MW1 RNU5A-1-201ENST00000362698 116 ntBASIC3.38□□□□□ -1.87
CCDC43Q96MW1 MIR620-201ENST00000385232 95 ntBASIC3.38□□□□□ -1.87
CCDC43Q96MW1 AL136310.1-201ENST00000404926 654 ntBASIC3.38□□□□□ -1.87
CCDC43Q96MW1 NDUFB4P5-201ENST00000415445 361 ntBASIC3.38□□□□□ -1.87
CCDC43Q96MW1 SDCBPP3-201ENST00000419629 891 ntBASIC3.38□□□□□ -1.87
CCDC43Q96MW1 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC3.38□□□□□ -1.87
CCDC43Q96MW1 OR4K11P-201ENST00000431829 904 ntBASIC3.38□□□□□ -1.87
CCDC43Q96MW1 AC244505.4-201ENST00000434905 287 ntBASIC3.38□□□□□ -1.87
CCDC43Q96MW1 SSXP5-201ENST00000443473 287 ntBASIC3.38□□□□□ -1.87
CCDC43Q96MW1 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.38□□□□□ -1.87
CCDC43Q96MW1 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.38□□□□□ -1.87
CCDC43Q96MW1 snoU13.8-201ENST00000458890 104 ntBASIC3.38□□□□□ -1.87
CCDC43Q96MW1 FAM172BP-201ENST00000487497 1089 ntBASIC3.38□□□□□ -1.87
CCDC43Q96MW1 AC147055.4-201ENST00000504399 745 ntBASIC3.38□□□□□ -1.87
CCDC43Q96MW1 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC3.38□□□□□ -1.87
CCDC43Q96MW1 POU5F1P7-201ENST00000508759 541 ntBASIC3.38□□□□□ -1.87
CCDC43Q96MW1 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC3.38□□□□□ -1.87
CCDC43Q96MW1 RNU6-150P-201ENST00000516237 95 ntBASIC3.38□□□□□ -1.87
CCDC43Q96MW1 SNORA31.22-201ENST00000517204 135 ntBASIC3.38□□□□□ -1.87
CCDC43Q96MW1 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.38□□□□□ -1.87
CCDC43Q96MW1 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC3.38□□□□□ -1.87
CCDC43Q96MW1 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC3.38□□□□□ -1.87
CCDC43Q96MW1 AP000867.2-201ENST00000532468 320 ntBASIC3.38□□□□□ -1.87
CCDC43Q96MW1 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC3.38□□□□□ -1.87
CCDC43Q96MW1 DNAJC8P1-201ENST00000554535 372 ntBASIC3.38□□□□□ -1.87
CCDC43Q96MW1 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC3.38□□□□□ -1.87
CCDC43Q96MW1 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.38□□□□□ -1.87
CCDC43Q96MW1 AC002550.2-201ENST00000621246 394 ntBASIC3.38□□□□□ -1.87
CCDC43Q96MW1 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
CCDC43Q96MW1 MTND4P9-201ENST00000507819 1346 ntBASIC3.38□□□□□ -1.87
CCDC43Q96MW1 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.38□□□□□ -1.87
CCDC43Q96MW1 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
CCDC43Q96MW1 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
CCDC43Q96MW1 Y_RNA.234-201ENST00000364409 97 ntBASIC3.37□□□□□ -1.87
CCDC43Q96MW1 ERHP2-201ENST00000402323 299 ntBASIC3.37□□□□□ -1.87
CCDC43Q96MW1 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC3.37□□□□□ -1.87
CCDC43Q96MW1 RPS3AP37-201ENST00000419176 745 ntBASIC3.37□□□□□ -1.87
CCDC43Q96MW1 USP9YP11-201ENST00000427537 717 ntBASIC3.37□□□□□ -1.87
CCDC43Q96MW1 OR2AS1P-201ENST00000427827 319 ntBASIC3.37□□□□□ -1.87
CCDC43Q96MW1 EEF1A1P39-201ENST00000440791 250 ntBASIC3.37□□□□□ -1.87
CCDC43Q96MW1 RPS12P18-201ENST00000442381 270 ntBASIC3.37□□□□□ -1.87
CCDC43Q96MW1 AC002381.1-201ENST00000447049 280 ntBASIC3.37□□□□□ -1.87
CCDC43Q96MW1 NANOGNBP1-201ENST00000448444 480 ntBASIC3.37□□□□□ -1.87
CCDC43Q96MW1 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC3.37□□□□□ -1.87
CCDC43Q96MW1 AC093392.2-201ENST00000450682 337 ntBASIC3.37□□□□□ -1.87
CCDC43Q96MW1 FCF1P6-201ENST00000456841 595 ntBASIC3.37□□□□□ -1.87
CCDC43Q96MW1 snoU109.3-201ENST00000459477 145 ntBASIC3.37□□□□□ -1.87
CCDC43Q96MW1 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC3.37□□□□□ -1.87
CCDC43Q96MW1 AC006483.1-201ENST00000487308 313 ntBASIC3.37□□□□□ -1.87
CCDC43Q96MW1 PANCR-202ENST00000513690 448 ntTSL 2 BASIC3.37□□□□□ -1.87
CCDC43Q96MW1 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.37□□□□□ -1.87
CCDC43Q96MW1 DEFB131D-201ENST00000526803 184 ntBASIC3.37□□□□□ -1.87
CCDC43Q96MW1 AC090695.1-201ENST00000561269 1222 ntBASIC3.37□□□□□ -1.87
CCDC43Q96MW1 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC3.37□□□□□ -1.87
CCDC43Q96MW1 MIR3609-201ENST00000582661 80 ntBASIC3.37□□□□□ -1.87
CCDC43Q96MW1 AC004987.4-201ENST00000603383 338 ntBASIC3.37□□□□□ -1.87
CCDC43Q96MW1 MTND3P19-201ENST00000603825 345 ntBASIC3.37□□□□□ -1.87
CCDC43Q96MW1 NUTF2P8-201ENST00000604593 363 ntBASIC3.37□□□□□ -1.87
CCDC43Q96MW1 AL158211.4-201ENST00000606988 584 ntBASIC3.37□□□□□ -1.87
CCDC43Q96MW1 AC004067.1-201ENST00000608733 700 ntBASIC3.37□□□□□ -1.87
CCDC43Q96MW1 ATP5A1P2-202ENST00000616464 443 ntBASIC3.37□□□□□ -1.87
CCDC43Q96MW1 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.37□□□□□ -1.87
CCDC43Q96MW1 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC3.37□□□□□ -1.87
CCDC43Q96MW1 MTND5P19-201ENST00000424872 1794 ntBASIC3.37□□□□□ -1.87
CCDC43Q96MW1 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC3.37□□□□□ -1.87
CCDC43Q96MW1 MAPK10-362ENST00000641864 4484 ntBASIC3.37□□□□□ -1.87
CCDC43Q96MW1 AC103988.1-201ENST00000566382 2177 ntBASIC3.36□□□□□ -1.87
CCDC43Q96MW1 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
CCDC43Q96MW1 AC005832.2-201ENST00000538921 1430 ntBASIC3.36□□□□□ -1.87
CCDC43Q96MW1 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.36□□□□□ -1.87
CCDC43Q96MW1 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC3.36□□□□□ -1.87
CCDC43Q96MW1 AL390862.1-201ENST00000635467 1469 ntBASIC3.36□□□□□ -1.87
CCDC43Q96MW1 RNU6-799P-201ENST00000363567 107 ntBASIC3.36□□□□□ -1.87
CCDC43Q96MW1 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
CCDC43Q96MW1 Z92545.1-201ENST00000411782 234 ntBASIC3.36□□□□□ -1.87
CCDC43Q96MW1 MTATP6P20-201ENST00000414147 562 ntBASIC3.36□□□□□ -1.87
CCDC43Q96MW1 AL356320.2-201ENST00000417263 507 ntBASIC3.36□□□□□ -1.87
CCDC43Q96MW1 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC3.36□□□□□ -1.87
CCDC43Q96MW1 DPPA2P1-201ENST00000428060 556 ntBASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 119.9 ms