Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AK3P4-201ENST00000504283 583 ntBASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 CDV3-208ENST00000511392 554 ntTSL 5 BASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 SNORA19.2-201ENST00000516013 114 ntBASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 AP000857.1-201ENST00000532151 543 ntBASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 SUB1P2-201ENST00000556401 297 ntBASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 BNIP3P5-201ENST00000562290 498 ntBASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 AC093249.4-201ENST00000564755 259 ntBASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 MIR3118-1-201ENST00000581787 76 ntBASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 AC209154.1-201ENST00000582156 337 ntBASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 AL391813.2-201ENST00000609113 322 ntBASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 MIR8069-1-201ENST00000616627 86 ntBASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 AC079684.1-201ENST00000621405 437 ntBASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 MIR8069-2-201ENST00000621412 86 ntBASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 AC091953.2-201ENST00000623979 160 ntBASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 AP001350.1-201ENST00000601906 1524 ntBASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 MFSD8-216ENST00000641147 4009 ntBASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 MIR448-201ENST00000362131 111 ntBASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 Y_RNA.474-201ENST00000384341 102 ntBASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 MIR3074-201ENST00000384885 81 ntBASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 RN7SKP32-201ENST00000410167 303 ntBASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 RNA5SP239-201ENST00000410218 129 ntBASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 CYP4F29P-201ENST00000420685 446 ntBASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 C4BPAP2-201ENST00000428434 478 ntBASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 FTH1P6-201ENST00000430768 320 ntBASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 GPM6BP2-201ENST00000432046 144 ntBASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 TIMM9P1-201ENST00000436122 256 ntBASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 CBWD4P-201ENST00000445695 655 ntBASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 GPM6BP1-201ENST00000446387 144 ntBASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 BTF3P6-201ENST00000448054 499 ntBASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 AC108059.3-201ENST00000456388 214 ntBASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 AC103851.1-201ENST00000506833 274 ntBASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 AC005921.1-201ENST00000510589 286 ntBASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 AC021146.1-201ENST00000511202 716 ntBASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 AC108043.1-201ENST00000512696 574 ntBASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 AC112206.3-201ENST00000514578 389 ntBASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 RNA5SP249-201ENST00000516127 99 ntBASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 RNU7-30P-201ENST00000516835 62 ntBASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 MYL12AP1-201ENST00000518490 515 ntBASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 AC107934.1-201ENST00000522215 217 ntBASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 RNF138P2-201ENST00000603490 592 ntBASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 AL022099.1-201ENST00000604551 712 ntBASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 MIR98-201ENST00000606724 119 ntBASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 AL603758.1-201ENST00000618654 241 ntBASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 TPTEP1-208ENST00000636884 213 ntBASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
CLIP3Q96DZ5 AC016588.2-201ENST00000632484 3021 ntBASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 RNA5SP189-201ENST00000364920 115 ntBASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 SNORA70F-201ENST00000384142 135 ntBASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 RNU6-74P-201ENST00000384235 107 ntBASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 MIR607-201ENST00000385241 96 ntBASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 Z98745.1-201ENST00000402553 494 ntBASIC4.48□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 134.7 ms