Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 SNORA31.8-201ENST00000516327 108 ntBASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 DEFB131D-201ENST00000526803 184 ntBASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 MED28P6-201ENST00000558776 231 ntBASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 FAM60BP-201ENST00000578364 658 ntBASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 MTCO2P2-201ENST00000591258 225 ntBASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 NUTF2P8-201ENST00000604593 363 ntBASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 AC004853.1-201ENST00000604902 698 ntBASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 AL133507.1-201ENST00000605269 557 ntBASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 AC090115.4-201ENST00000609970 188 ntBASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 AC107871.2-201ENST00000612894 502 ntBASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 AC100793.4-201ENST00000613683 429 ntBASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 MIR6076-201ENST00000617521 113 ntBASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 MIR7975-201ENST00000619350 68 ntBASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 AL391262.2-201ENST00000622466 494 ntBASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 AC002064.3-201ENST00000623448 346 ntBASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC2.58□□□□□ -2
CCDC54Q8NEL0 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC2.58□□□□□ -2
CCDC54Q8NEL0 FAM35BP-202ENST00000497389 3337 ntBASIC2.58□□□□□ -2
CCDC54Q8NEL0 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.58□□□□□ -2
CCDC54Q8NEL0 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
CCDC54Q8NEL0 FRG1BP-201ENST00000278882 761 ntBASIC2.58□□□□□ -2
CCDC54Q8NEL0 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC2.58□□□□□ -2
CCDC54Q8NEL0 RNU4-92P-201ENST00000363783 136 ntBASIC2.58□□□□□ -2
CCDC54Q8NEL0 RNU6-777P-201ENST00000364265 104 ntBASIC2.58□□□□□ -2
CCDC54Q8NEL0 SNORA9.2-201ENST00000365361 133 ntBASIC2.58□□□□□ -2
CCDC54Q8NEL0 MIR183-201ENST00000384958 110 ntBASIC2.58□□□□□ -2
CCDC54Q8NEL0 AL136372.1-201ENST00000403060 228 ntBASIC2.58□□□□□ -2
CCDC54Q8NEL0 HMGN2P35-201ENST00000412164 270 ntBASIC2.58□□□□□ -2
CCDC54Q8NEL0 NIPA2P1-201ENST00000426223 976 ntBASIC2.58□□□□□ -2
CCDC54Q8NEL0 AC005326.1-201ENST00000429197 123 ntBASIC2.58□□□□□ -2
CCDC54Q8NEL0 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC2.58□□□□□ -2
CCDC54Q8NEL0 RPL23AP74-201ENST00000437246 471 ntBASIC2.58□□□□□ -2
CCDC54Q8NEL0 MTCYBP34-201ENST00000439552 670 ntBASIC2.58□□□□□ -2
CCDC54Q8NEL0 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC2.58□□□□□ -2
CCDC54Q8NEL0 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC2.58□□□□□ -2
CCDC54Q8NEL0 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.58□□□□□ -2
CCDC54Q8NEL0 Z75741.1-201ENST00000446793 314 ntBASIC2.58□□□□□ -2
CCDC54Q8NEL0 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.58□□□□□ -2
CCDC54Q8NEL0 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC2.58□□□□□ -2
CCDC54Q8NEL0 AL031183.1-201ENST00000457667 207 ntBASIC2.58□□□□□ -2
CCDC54Q8NEL0 RPL27AP5-201ENST00000469428 449 ntBASIC2.58□□□□□ -2
CCDC54Q8NEL0 RPL30P14-201ENST00000482744 348 ntBASIC2.58□□□□□ -2
CCDC54Q8NEL0 AP002812.1-201ENST00000495378 474 ntBASIC2.58□□□□□ -2
CCDC54Q8NEL0 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC2.58□□□□□ -2
CCDC54Q8NEL0 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.58□□□□□ -2
CCDC54Q8NEL0 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC2.58□□□□□ -2
CCDC54Q8NEL0 HSPE1P23-201ENST00000509838 286 ntBASIC2.58□□□□□ -2
CCDC54Q8NEL0 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC2.58□□□□□ -2
CCDC54Q8NEL0 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC2.58□□□□□ -2
CCDC54Q8NEL0 RNU6-415P-201ENST00000516252 97 ntBASIC2.58□□□□□ -2
CCDC54Q8NEL0 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC2.58□□□□□ -2
CCDC54Q8NEL0 FAM60DP-201ENST00000524174 632 ntBASIC2.58□□□□□ -2
CCDC54Q8NEL0 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC2.58□□□□□ -2
CCDC54Q8NEL0 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC2.58□□□□□ -2
CCDC54Q8NEL0 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC2.58□□□□□ -2
CCDC54Q8NEL0 MIR5004-201ENST00000579078 107 ntBASIC2.58□□□□□ -2
CCDC54Q8NEL0 UBL5P2-201ENST00000583788 219 ntBASIC2.58□□□□□ -2
CCDC54Q8NEL0 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC2.58□□□□□ -2
CCDC54Q8NEL0 BNIP3P40-201ENST00000596017 556 ntBASIC2.58□□□□□ -2
CCDC54Q8NEL0 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC2.58□□□□□ -2
CCDC54Q8NEL0 AL606834.2-201ENST00000602954 668 ntBASIC2.58□□□□□ -2
CCDC54Q8NEL0 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC2.58□□□□□ -2
CCDC54Q8NEL0 ELOCP35-201ENST00000604289 336 ntBASIC2.58□□□□□ -2
CCDC54Q8NEL0 AL022099.1-201ENST00000604551 712 ntBASIC2.58□□□□□ -2
CCDC54Q8NEL0 AC019159.1-201ENST00000605094 187 ntBASIC2.58□□□□□ -2
CCDC54Q8NEL0 AC006270.3-201ENST00000605967 1036 ntBASIC2.58□□□□□ -2
CCDC54Q8NEL0 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC2.58□□□□□ -2
CCDC54Q8NEL0 U6.105-201ENST00000637379 88 ntBASIC2.58□□□□□ -2
CCDC54Q8NEL0 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC2.58□□□□□ -2
CCDC54Q8NEL0 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
CCDC54Q8NEL0 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.57□□□□□ -2
CCDC54Q8NEL0 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC2.57□□□□□ -2
CCDC54Q8NEL0 AP000776.1-201ENST00000530032 1663 ntBASIC2.57□□□□□ -2
CCDC54Q8NEL0 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC2.57□□□□□ -2
CCDC54Q8NEL0 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.57□□□□□ -2
CCDC54Q8NEL0 AC011460.1-201ENST00000636268 1834 ntBASIC2.57□□□□□ -2
CCDC54Q8NEL0 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
CCDC54Q8NEL0 RNA5SP72-201ENST00000364442 117 ntBASIC2.57□□□□□ -2
CCDC54Q8NEL0 MIR181B1-201ENST00000385240 110 ntBASIC2.57□□□□□ -2
CCDC54Q8NEL0 SNORD67-201ENST00000390833 111 ntBASIC2.57□□□□□ -2
CCDC54Q8NEL0 RNU6-882P-201ENST00000391025 103 ntBASIC2.57□□□□□ -2
CCDC54Q8NEL0 AL356967.1-201ENST00000406305 431 ntBASIC2.57□□□□□ -2
CCDC54Q8NEL0 FAT1P1-201ENST00000406588 507 ntBASIC2.57□□□□□ -2
CCDC54Q8NEL0 SSR1P2-201ENST00000415208 787 ntBASIC2.57□□□□□ -2
CCDC54Q8NEL0 AL139421.1-201ENST00000423010 169 ntBASIC2.57□□□□□ -2
CCDC54Q8NEL0 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC2.57□□□□□ -2
CCDC54Q8NEL0 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC2.57□□□□□ -2
CCDC54Q8NEL0 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC2.57□□□□□ -2
CCDC54Q8NEL0 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC2.57□□□□□ -2
CCDC54Q8NEL0 AC092155.2-201ENST00000454675 477 ntBASIC2.57□□□□□ -2
CCDC54Q8NEL0 AC091951.3-201ENST00000504093 246 ntBASIC2.57□□□□□ -2
CCDC54Q8NEL0 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC2.57□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms